RNA–Protein interactions for RNA: ENST00000353411.10

SKP1-202, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SKP1, Length 9,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-202ENST00000353411 WDR43Q15061 677 aaKnown RBP eCLIP6.39□□□□□ -1.39
SKP1-202ENST00000353411 ISY1Q9ULR0 285 aaKnown RBP6.39□□□□□ -1.39
SKP1-202ENST00000353411 MSH5O43196 834 aa6.38□□□□□ -1.39
SKP1-202ENST00000353411 RGS3P49796 1198 aa6.38□□□□□ -1.39
SKP1-202ENST00000353411 MRE11P49959 708 aa6.38□□□□□ -1.39
SKP1-202ENST00000353411 PAXIP1Q6ZW49 1069 aaPredicted RBP6.38□□□□□ -1.39
SKP1-202ENST00000353411 SYAP1Q96A49 352 aaPredicted RBP6.38□□□□□ -1.39
SKP1-202ENST00000353411 TNIKQ9UKE5 1360 aa6.38□□□□□ -1.39
SKP1-202ENST00000353411 SETQ01105 290 aaPredicted RBP6.38□□□□□ -1.39
SKP1-202ENST00000353411 CLIP1P30622 1438 aa6.37□□□□□ -1.39
SKP1-202ENST00000353411 GOLGA3Q08378 1498 aa6.37□□□□□ -1.39
SKP1-202ENST00000353411 NUDCQ9Y266 331 aa6.37□□□□□ -1.39
SKP1-202ENST00000353411 NOM1Q5C9Z4 860 aaKnown RBP6.37□□□□□ -1.39
SKP1-202ENST00000353411 CHMP4AQ9BY43 222 aa6.37□□□□□ -1.39
SKP1-202ENST00000353411 SLKQ9H2G2 1235 aaPredicted RBP6.37□□□□□ -1.39
SKP1-202ENST00000353411 CASC1Q6TDU7 716 aa6.36□□□□□ -1.39
SKP1-202ENST00000353411 ZNF526Q8TF50 670 aaPredicted RBP6.36□□□□□ -1.39
SKP1-202ENST00000353411 TSPYL1Q9H0U9 437 aa6.36□□□□□ -1.39
SKP1-202ENST00000353411 HIRIP3Q9BW71 556 aaPredicted RBP6.36□□□□□ -1.39
SKP1-202ENST00000353411 C11orf95C9JLR9 678 aaPredicted RBP6.36□□□□□ -1.39
SKP1-202ENST00000353411 BRD2P25440 801 aaKnown RBP6.36□□□□□ -1.39
SKP1-202ENST00000353411 HTATSF1O43719 755 aaKnown RBP6.35□□□□□ -1.39
SKP1-202ENST00000353411 ZBED9Q6R2W3 1325 aa6.35□□□□□ -1.39
SKP1-202ENST00000353411 HSP90B1P14625 803 aaKnown RBP6.35□□□□□ -1.39
SKP1-202ENST00000353411 FAM161AQ3B820 660 aa6.35□□□□□ -1.39
SKP1-202ENST00000353411 TEX35Q5T0J7 233 aa6.35□□□□□ -1.39
SKP1-202ENST00000353411 PHF14O94880 888 aa6.35□□□□□ -1.39
SKP1-202ENST00000353411 HMGN5P82970 282 aaKnown RBP6.34□□□□□ -1.39
SKP1-202ENST00000353411 DHX37Q8IY37 1157 aaKnown RBP6.34□□□□□ -1.39
SKP1-202ENST00000353411 BBXQ8WY36 941 aaPredicted RBP6.34□□□□□ -1.39
SKP1-202ENST00000353411 PAK3O75914 559 aaPredicted RBP6.34□□□□□ -1.4
SKP1-202ENST00000353411 GPS2Q13227 327 aa6.34□□□□□ -1.4
SKP1-202ENST00000353411 ZRSR1Q15695 479 aaKnown RBP6.34□□□□□ -1.4
SKP1-202ENST00000353411 RCAN3Q9UKA8 241 aa6.34□□□□□ -1.4
SKP1-202ENST00000353411 RBM10P98175 930 aaKnown RBP6.33□□□□□ -1.4
SKP1-202ENST00000353411 CALD1Q05682 793 aaKnown RBP6.33□□□□□ -1.4
SKP1-202ENST00000353411 CWC15Q9P013 229 aaKnown RBP6.32□□□□□ -1.4
SKP1-202ENST00000353411 CENPQQ7L2Z9 268 aaPredicted RBP6.32□□□□□ -1.4
SKP1-202ENST00000353411 WRNQ14191 1432 aaPredicted RBP eCLIP6.31□□□□□ -1.43e-11■■■□□ 19.1
SKP1-202ENST00000353411 CHMP4BQ9H444 224 aaKnown RBP6.31□□□□□ -1.4
SKP1-202ENST00000353411 PDE3BQ13370 1112 aa6.31□□□□□ -1.4
SKP1-202ENST00000353411 DRC7Q8IY82 874 aa6.31□□□□□ -1.4
SKP1-202ENST00000353411 CCDC173Q0VFZ6 552 aa6.31□□□□□ -1.4
SKP1-202ENST00000353411 DIAPH3Q9NSV4 1193 aa6.31□□□□□ -1.4
SKP1-202ENST00000353411 ESPNB1AK53 854 aa6.31□□□□□ -1.4
SKP1-202ENST00000353411 KIAA1211Q6ZU35 1233 aa6.31□□□□□ -1.4
SKP1-202ENST00000353411 FBLN2P98095 1184 aa6.3□□□□□ -1.4
SKP1-202ENST00000353411 R3HCC1Q9Y3T6 440 aaKnown RBP6.3□□□□□ -1.4
SKP1-202ENST00000353411 MAPK8IP3Q9UPT6 1336 aa6.3□□□□□ -1.4
SKP1-202ENST00000353411 HMGXB3Q12766 1538 aa6.3□□□□□ -1.4
SKP1-202ENST00000353411 SPRYD3Q8NCJ5 442 aa6.29□□□□□ -1.4
SKP1-202ENST00000353411 CCDC39Q9UFE4 941 aa6.29□□□□□ -1.4
SKP1-202ENST00000353411 ADRA2BP18089 450 aa6.29□□□□□ -1.4
SKP1-202ENST00000353411 CHMP5Q9NZZ3 219 aa6.29□□□□□ -1.4
SKP1-202ENST00000353411 FTSJ3Q8IY81 847 aaKnown RBP6.29□□□□□ -1.4
SKP1-202ENST00000353411 ESF1Q9H501 851 aaKnown RBP6.29□□□□□ -1.4
SKP1-202ENST00000353411 KCNH8Q96L42 1107 aa6.28□□□□□ -1.4
SKP1-202ENST00000353411 NASPP49321 788 aaPredicted RBP6.28□□□□□ -1.4
SKP1-202ENST00000353411 IRX3P78415 501 aaPredicted RBP6.28□□□□□ -1.4
SKP1-202ENST00000353411 CLCN1P35523 988 aa6.28□□□□□ -1.4
SKP1-202ENST00000353411 LETM1O95202 739 aaPredicted RBP6.28□□□□□ -1.4
SKP1-202ENST00000353411 CEP164Q9UPV0 1460 aa6.28□□□□□ -1.4
SKP1-202ENST00000353411 DNAJC2Q99543 621 aaKnown RBP6.27□□□□□ -1.4
SKP1-202ENST00000353411 CCNB3Q8WWL7 1395 aa6.27□□□□□ -1.41
SKP1-202ENST00000353411 CHMP7Q8WUX9 453 aaPredicted RBP6.27□□□□□ -1.41
SKP1-202ENST00000353411 KTN1Q86UP2 1357 aaKnown RBP6.27□□□□□ -1.41
SKP1-202ENST00000353411 PMFBP1Q8TBY8 1022 aa6.27□□□□□ -1.41
SKP1-202ENST00000353411 DDX49Q9Y6V7 483 aaKnown RBP6.27□□□□□ -1.41
SKP1-202ENST00000353411 FGD1P98174 961 aa6.27□□□□□ -1.41
SKP1-202ENST00000353411 UQCRHLA0A096LP55 91 aa6.27□□□□□ -1.41
SKP1-202ENST00000353411 UQCRHP07919 91 aa6.27□□□□□ -1.41
SKP1-202ENST00000353411 SLC4A3P48751 1232 aa6.26□□□□□ -1.41
SKP1-202ENST00000353411 FRAT2O75474 233 aaPredicted RBP6.26□□□□□ -1.41
SKP1-202ENST00000353411 PDCL2Q8N4E4 241 aa6.26□□□□□ -1.41
SKP1-202ENST00000353411 PHLDB1Q86UU1 1377 aa6.26□□□□□ -1.41
SKP1-202ENST00000353411 KIF16BQ96L93 1317 aa6.26□□□□□ -1.41
SKP1-202ENST00000353411 RRP1P56182 461 aaKnown RBP6.26□□□□□ -1.41
SKP1-202ENST00000353411 CALCOCO1Q9P1Z2 691 aa6.26□□□□□ -1.41
SKP1-202ENST00000353411 SMAP1Q8IYB5 467 aaPredicted RBP6.26□□□□□ -1.41
SKP1-202ENST00000353411 GTPBP4Q9BZE4 634 aaKnown RBP6.26□□□□□ -1.41
SKP1-202ENST00000353411 KIF3AQ9Y496 699 aa6.25□□□□□ -1.41
SKP1-202ENST00000353411 SETD5Q9C0A6 1442 aa6.25□□□□□ -1.41
SKP1-202ENST00000353411 GOLGA6L4A6NEF3 574 aa6.25□□□□□ -1.41
SKP1-202ENST00000353411 TPM3P06753 285 aa6.25□□□□□ -1.41
SKP1-202ENST00000353411 NAP1L2Q9ULW6 460 aaPredicted RBP6.25□□□□□ -1.41
SKP1-202ENST00000353411 RWDD1Q9H446 243 aaPredicted RBP6.25□□□□□ -1.41
SKP1-202ENST00000353411 ZSCAN30Q86W11 494 aa6.25□□□□□ -1.41
SKP1-202ENST00000353411 WASHC2AQ641Q2 1341 aa6.25□□□□□ -1.41
SKP1-202ENST00000353411 DYNC1I1O14576 645 aa6.25□□□□□ -1.41
SKP1-202ENST00000353411 TRAK2O60296 914 aa6.25□□□□□ -1.41
SKP1-202ENST00000353411 GRPEL1Q9HAV7 217 aa6.25□□□□□ -1.41
SKP1-202ENST00000353411 EIF4G1Q04637 1599 aaKnown RBP6.25□□□□□ -1.41
SKP1-202ENST00000353411 DEF6Q9H4E7 631 aa6.25□□□□□ -1.41
SKP1-202ENST00000353411 ARGLU1Q9NWB6 273 aaPredicted RBP6.25□□□□□ -1.41
SKP1-202ENST00000353411 PATL2C9JE40 543 aaKnown RBP6.24□□□□□ -1.41
SKP1-202ENST00000353411 CC2D1BQ5T0F9 858 aaKnown RBP6.24□□□□□ -1.41
SKP1-202ENST00000353411 BACH2Q9BYV9 841 aa6.24□□□□□ -1.41
SKP1-202ENST00000353411 NCAPD3P42695 1498 aa6.24□□□□□ -1.41
SKP1-202ENST00000353411 MCCP23508 829 aa6.24□□□□□ -1.41
SKP1-202ENST00000353411 RALBP1Q15311 655 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms