RNA–Protein interactions for RNA: ENST00000296273.6

RFC4-201, Transcript of replication factor C subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFC4, Length 1,384 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-201ENST00000296273 CDK11AQ9UQ88 783 aaPredicted RBP17.5■□□□□ 0.39
RFC4-201ENST00000296273 EFCAB2Q5VUJ9 269 aa17.48■□□□□ 0.39
RFC4-201ENST00000296273 SIGLEC1Q9BZZ2 1709 aa17.47■□□□□ 0.39
RFC4-201ENST00000296273 HSPA2P54652 639 aa17.46■□□□□ 0.39
RFC4-201ENST00000296273 ATP10AO60312 1499 aa17.46■□□□□ 0.39
RFC4-201ENST00000296273 C9orf84Q5VXU9 1444 aa17.46■□□□□ 0.39
RFC4-201ENST00000296273 UBTFP17480 764 aaKnown RBP17.45■□□□□ 0.38
RFC4-201ENST00000296273 MLECQ14165 292 aa17.45■□□□□ 0.38
RFC4-201ENST00000296273 PLPPR3Q6T4P5 718 aa17.45■□□□□ 0.38
RFC4-201ENST00000296273 FER1L4A9Z1Z3 1794 aa17.45■□□□□ 0.38
RFC4-201ENST00000296273 MYO5CQ9NQX4 1742 aa17.45■□□□□ 0.38
RFC4-201ENST00000296273 ATP1B4Q9UN42 357 aaPredicted RBP17.44■□□□□ 0.38
RFC4-201ENST00000296273 ARHGEF12Q9NZN5 1544 aa17.44■□□□□ 0.38
RFC4-201ENST00000296273 ZNF518AQ6AHZ1 1483 aa17.43■□□□□ 0.38
RFC4-201ENST00000296273 ARHGAP35Q9NRY4 1499 aa17.43■□□□□ 0.38
RFC4-201ENST00000296273 KIF14Q15058 1648 aa17.42■□□□□ 0.38
RFC4-201ENST00000296273 CLIP1P30622 1438 aa17.41■□□□□ 0.38
RFC4-201ENST00000296273 TROQ12816 1431 aaPredicted RBP17.41■□□□□ 0.38
RFC4-201ENST00000296273 ARHGAP5Q13017 1502 aa17.38■□□□□ 0.37
RFC4-201ENST00000296273 KDM5CP41229 1560 aa17.38■□□□□ 0.37
RFC4-201ENST00000296273 CERKQ8TCT0 537 aa17.38■□□□□ 0.37
RFC4-201ENST00000296273 PREX1Q8TCU6 1659 aa17.37■□□□□ 0.37
RFC4-201ENST00000296273 PHF23Q9BUL5 403 aaPredicted RBP17.36■□□□□ 0.37
RFC4-201ENST00000296273 REREQ9P2R6 1566 aa17.35■□□□□ 0.37
RFC4-201ENST00000296273 AFAP1Q8N556 730 aa17.34■□□□□ 0.37
RFC4-201ENST00000296273 EHMT2Q96KQ7 1210 aa17.34■□□□□ 0.37
RFC4-201ENST00000296273 DMRT2Q9Y5R5 561 aa17.34■□□□□ 0.37
RFC4-201ENST00000296273 MYT1LQ9UL68 1186 aa17.33■□□□□ 0.36
RFC4-201ENST00000296273 UHRF1BP1Q6BDS2 1440 aa17.32■□□□□ 0.36
RFC4-201ENST00000296273 MLH3Q9UHC1 1453 aa17.32■□□□□ 0.36
RFC4-201ENST00000296273 CEBPAP49715 358 aaPredicted RBP17.31■□□□□ 0.36
RFC4-201ENST00000296273 DIP2CQ9Y2E4 1556 aa17.31■□□□□ 0.36
RFC4-201ENST00000296273 CCDC18Q5T9S5 1454 aa17.3■□□□□ 0.36
RFC4-201ENST00000296273 CDC42BPBQ9Y5S2 1711 aa17.29■□□□□ 0.36
RFC4-201ENST00000296273 LRRIQ1Q96JM4 1722 aa17.29■□□□□ 0.36
RFC4-201ENST00000296273 AGLP35573 1532 aa17.28■□□□□ 0.36
RFC4-201ENST00000296273 PREX2Q70Z35 1606 aa17.28■□□□□ 0.36
RFC4-201ENST00000296273 ESF1Q9H501 851 aaKnown RBP17.28■□□□□ 0.36
RFC4-201ENST00000296273 CASKIN1Q8WXD9 1431 aa17.27■□□□□ 0.35
RFC4-201ENST00000296273 ABCC1P33527 1531 aa17.27■□□□□ 0.35
RFC4-201ENST00000296273 ABCA6Q8N139 1617 aa17.26■□□□□ 0.35
RFC4-201ENST00000296273 SETD1BQ9UPS6 1966 aaKnown RBP17.26■□□□□ 0.35
RFC4-201ENST00000296273 TRAPPC8Q9Y2L5 1435 aa17.24■□□□□ 0.35
RFC4-201ENST00000296273 STRCQ7RTU9 1775 aa17.24■□□□□ 0.35
RFC4-201ENST00000296273 ITSN2Q9NZM3 1697 aa17.24■□□□□ 0.35
RFC4-201ENST00000296273 CNTLNQ9NXG0 1405 aa17.23■□□□□ 0.35
RFC4-201ENST00000296273 C3P01024 1663 aa17.23■□□□□ 0.35
RFC4-201ENST00000296273 PTPRTO14522 1441 aa17.22■□□□□ 0.35
RFC4-201ENST00000296273 KIDINS220Q9ULH0 1771 aa17.2■□□□□ 0.34
RFC4-201ENST00000296273 FYCO1Q9BQS8 1478 aa17.19■□□□□ 0.34
RFC4-201ENST00000296273 CDC42BPAQ5VT25 1732 aa17.18■□□□□ 0.34
RFC4-201ENST00000296273 SAMD9LQ8IVG5 1584 aa17.16■□□□□ 0.34
RFC4-201ENST00000296273 NPATQ14207 1427 aa17.15■□□□□ 0.34
RFC4-201ENST00000296273 MROH2AA6NES4 1674 aa17.14■□□□□ 0.34
RFC4-201ENST00000296273 ZNF777Q9ULD5 760 aaPredicted RBP17.14■□□□□ 0.33
RFC4-201ENST00000296273 GPATCH8Q9UKJ3 1502 aaKnown RBP17.13■□□□□ 0.33
RFC4-201ENST00000296273 NCOA1Q15788 1441 aa17.13■□□□□ 0.33
RFC4-201ENST00000296273 SPAG9O60271 1321 aaKnown RBP17.13■□□□□ 0.33
RFC4-201ENST00000296273 IQSEC2Q5JU85 1478 aa17.13■□□□□ 0.33
RFC4-201ENST00000296273 SYCP2Q9BX26 1530 aa17.13■□□□□ 0.33
RFC4-201ENST00000296273 KIAA1107Q9UPP5 1409 aa17.12■□□□□ 0.33
RFC4-201ENST00000296273 PLEKHH2Q8IVE3 1493 aa17.12■□□□□ 0.33
RFC4-201ENST00000296273 ZMYM3Q14202 1370 aa17.11■□□□□ 0.33
RFC4-201ENST00000296273 LTBP4Q8N2S1 1624 aa17.1■□□□□ 0.33
RFC4-201ENST00000296273 ATP7AQ04656 1500 aa17.09■□□□□ 0.33
RFC4-201ENST00000296273 DISP3Q9P2K9 1392 aa17.09■□□□□ 0.33
RFC4-201ENST00000296273 HNRNPMP52272 730 aaKnown RBP eCLIP17.09■□□□□ 0.33
RFC4-201ENST00000296273 CFDP1Q9UEE9 299 aaPredicted RBP17.09■□□□□ 0.33
RFC4-201ENST00000296273 CAMSAP1Q5T5Y3 1602 aa17.08■□□□□ 0.32
RFC4-201ENST00000296273 PLXNC1O60486 1568 aa17.07■□□□□ 0.32
RFC4-201ENST00000296273 CCNB3Q8WWL7 1395 aa17.07■□□□□ 0.32
RFC4-201ENST00000296273 SUPT6HQ7KZ85 1726 aaKnown RBP17.07■□□□□ 0.32
RFC4-201ENST00000296273 A2MP01023 1474 aa17.06■□□□□ 0.32
RFC4-201ENST00000296273 INO80Q9ULG1 1556 aaPredicted RBP17.06■□□□□ 0.32
RFC4-201ENST00000296273 PPP6R1Q9UPN7 881 aa17.06■□□□□ 0.32
RFC4-201ENST00000296273 MTUS2Q5JR59 1369 aa17.04■□□□□ 0.32
RFC4-201ENST00000296273 PLA2R1Q13018 1463 aa17.04■□□□□ 0.32
RFC4-201ENST00000296273 PKD2Q13563 968 aa17.03■□□□□ 0.32
RFC4-201ENST00000296273 CLTCQ00610 1675 aaKnown RBP17.03■□□□□ 0.32
RFC4-201ENST00000296273 ZNF142P52746 1687 aaPredicted RBP17.02■□□□□ 0.32
RFC4-201ENST00000296273 PTPRKQ15262 1439 aa17.02■□□□□ 0.31
RFC4-201ENST00000296273 GGT6Q6P531 493 aa17.02■□□□□ 0.31
RFC4-201ENST00000296273 MYO3AQ8NEV4 1616 aa17.01■□□□□ 0.31
RFC4-201ENST00000296273 ILDR2Q71H61 639 aa17.01■□□□□ 0.31
RFC4-201ENST00000296273 ADGBQ8N7X0 1667 aa17■□□□□ 0.31
RFC4-201ENST00000296273 CEP170BQ9Y4F5 1589 aaPredicted RBP17■□□□□ 0.31
RFC4-201ENST00000296273 SOCS7O14512 581 aa17■□□□□ 0.31
RFC4-201ENST00000296273 SPATA31D1Q6ZQQ2 1576 aa16.99■□□□□ 0.31
RFC4-201ENST00000296273 NCKAP5LQ9HCH0 1330 aa16.99■□□□□ 0.31
RFC4-201ENST00000296273 TCOF1Q13428 1488 aaKnown RBP16.98■□□□□ 0.31
RFC4-201ENST00000296273 RTEL1-TNFRSF6BF6WH68 1400 aa16.98■□□□□ 0.31
RFC4-201ENST00000296273 EHBP1L1Q8N3D4 1523 aa16.97■□□□□ 0.31
RFC4-201ENST00000296273 ZNF335Q9H4Z2 1342 aaPredicted RBP16.96■□□□□ 0.31
RFC4-201ENST00000296273 MBD5Q9P267 1494 aa16.96■□□□□ 0.31
RFC4-201ENST00000296273 TIAM1Q13009 1591 aa16.96■□□□□ 0.31
RFC4-201ENST00000296273 CEP162Q5TB80 1403 aa16.94■□□□□ 0.3
RFC4-201ENST00000296273 DHX29Q7Z478 1369 aaKnown RBP16.94■□□□□ 0.3
RFC4-201ENST00000296273 A2ML1A8K2U0 1454 aa16.94■□□□□ 0.3
RFC4-201ENST00000296273 FAM135AQ9P2D6 1515 aa16.93■□□□□ 0.3
RFC4-201ENST00000296273 ZNF644Q9H582 1327 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms