RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ABCC5O15440 1437 aa34.39■■■■□ 3.1
TRIM54-201ENST00000296098 CAMSAP2Q08AD1 1489 aa34.35■■■■□ 3.09
TRIM54-201ENST00000296098 CHD1O14646 1710 aa34.34■■■■□ 3.09
TRIM54-201ENST00000296098 DENND4BO75064 1496 aaPredicted RBP34.34■■■■□ 3.09
TRIM54-201ENST00000296098 GPATCH8Q9UKJ3 1502 aaKnown RBP34.32■■■■□ 3.08
TRIM54-201ENST00000296098 ZNF644Q9H582 1327 aaPredicted RBP34.32■■■■□ 3.08
TRIM54-201ENST00000296098 TRIM52Q96A61 297 aa34.3■■■■□ 3.08
TRIM54-201ENST00000296098 ADGBQ8N7X0 1667 aa34.28■■■■□ 3.08
TRIM54-201ENST00000296098 CROCC2H7BZ55 1655 aa34.26■■■■□ 3.08
TRIM54-201ENST00000296098 KDM5BQ9UGL1 1544 aa34.25■■■■□ 3.07
TRIM54-201ENST00000296098 CFDP1Q9UEE9 299 aaPredicted RBP34.25■■■■□ 3.07
TRIM54-201ENST00000296098 GTF3C3Q9Y5Q9 886 aa34.25■■■■□ 3.07
TRIM54-201ENST00000296098 ATP10BO94823 1461 aa34.24■■■■□ 3.07
TRIM54-201ENST00000296098 CDC42BPAQ5VT25 1732 aa34.21■■■■□ 3.07
TRIM54-201ENST00000296098 MPHOSPH9Q99550 1183 aa34.2■■■■□ 3.06
TRIM54-201ENST00000296098 ABCC10Q5T3U5 1492 aa34.18■■■■□ 3.06
TRIM54-201ENST00000296098 PLEKHD1A6NEE1 506 aa34.18■■■■□ 3.06
TRIM54-201ENST00000296098 SHROOM2Q13796 1616 aa34.17■■■■□ 3.06
TRIM54-201ENST00000296098 PTPRGP23470 1445 aa34.17■■■■□ 3.06
TRIM54-201ENST00000296098 ADGRL2O95490 1459 aa34.15■■■■□ 3.06
TRIM54-201ENST00000296098 NCOA1Q15788 1441 aa34.1■■■■□ 3.05
TRIM54-201ENST00000296098 ZNF777Q9ULD5 760 aaPredicted RBP34.09■■■■□ 3.05
TRIM54-201ENST00000296098 DDX10Q13206 875 aaKnown RBP34.06■■■■□ 3.04
TRIM54-201ENST00000296098 SHANK2Q9UPX8 1470 aa34.04■■■■□ 3.04
TRIM54-201ENST00000296098 HIRIP3Q9BW71 556 aaPredicted RBP34.03■■■■□ 3.04
TRIM54-201ENST00000296098 ANKRD30BQ9BXX2 1392 aa34.01■■■■□ 3.04
TRIM54-201ENST00000296098 ANKRD30AQ9BXX3 1397 aa34.01■■■■□ 3.03
TRIM54-201ENST00000296098 PZPP20742 1482 aa33.99■■■■□ 3.03
TRIM54-201ENST00000296098 RPRD2Q5VT52 1461 aaKnown RBP33.99■■■■□ 3.03
TRIM54-201ENST00000296098 FOXD1Q16676 465 aa33.98■■■■□ 3.03
TRIM54-201ENST00000296098 SLC4A1APQ9BWU0 796 aaKnown RBP33.96■■■■□ 3.03
TRIM54-201ENST00000296098 PREX2Q70Z35 1606 aa33.95■■■■□ 3.03
TRIM54-201ENST00000296098 ARHGEF5Q12774 1597 aa33.94■■■■□ 3.02
TRIM54-201ENST00000296098 C9orf84Q5VXU9 1444 aa33.93■■■■□ 3.02
TRIM54-201ENST00000296098 TEX14Q8IWB6 1497 aa33.91■■■■□ 3.02
TRIM54-201ENST00000296098 ERCC6L2Q5T890 1561 aa33.91■■■■□ 3.02
TRIM54-201ENST00000296098 CDC42BPBQ9Y5S2 1711 aa33.89■■■■□ 3.02
TRIM54-201ENST00000296098 ANKRD50Q9ULJ7 1429 aa33.89■■■■□ 3.02
TRIM54-201ENST00000296098 ABCC2Q92887 1545 aa33.89■■■■□ 3.02
TRIM54-201ENST00000296098 L3MBTL2Q969R5 705 aa33.88■■■■□ 3.01
TRIM54-201ENST00000296098 SAMD9LQ8IVG5 1584 aa33.86■■■■□ 3.01
TRIM54-201ENST00000296098 CLASP1Q7Z460 1538 aa33.85■■■■□ 3.01
TRIM54-201ENST00000296098 KIAA1107Q9UPP5 1409 aa33.82■■■■□ 3.01
TRIM54-201ENST00000296098 MBD5Q9P267 1494 aa33.81■■■■□ 3
TRIM54-201ENST00000296098 TTC37Q6PGP7 1564 aa33.81■■■■□ 3
TRIM54-201ENST00000296098 CCDC141Q6ZP82 1450 aa33.79■■■■□ 3
TRIM54-201ENST00000296098 TSPY4P0CV99 314 aa33.78■■■■□ 3
TRIM54-201ENST00000296098 TSPY10P0CW01 314 aa33.78■■■■□ 3
TRIM54-201ENST00000296098 KCNH8Q96L42 1107 aa33.77■■■■□ 3
TRIM54-201ENST00000296098 KDM5DQ9BY66 1539 aa33.77■■■■□ 3
TRIM54-201ENST00000296098 HSPA5P11021 654 aaKnown RBP33.77■■■■□ 3
TRIM54-201ENST00000296098 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.76■■■□□ 2.99
TRIM54-201ENST00000296098 ANP32CO43423 234 aa33.75■■■□□ 2.99
TRIM54-201ENST00000296098 EIF4G2P78344 907 aaKnown RBP eCLIP33.74■■■□□ 2.99
TRIM54-201ENST00000296098 KIF15Q9NS87 1388 aa33.73■■■□□ 2.99
TRIM54-201ENST00000296098 MYO5CQ9NQX4 1742 aa33.73■■■□□ 2.99
TRIM54-201ENST00000296098 HNRNPMP52272 730 aaKnown RBP eCLIP33.73■■■□□ 2.99
TRIM54-201ENST00000296098 ARHGAP5Q13017 1502 aa33.72■■■□□ 2.99
TRIM54-201ENST00000296098 CCER2I3L3R5 266 aa33.7■■■□□ 2.99
TRIM54-201ENST00000296098 SYCP2Q9BX26 1530 aa33.7■■■□□ 2.98
TRIM54-201ENST00000296098 PKD2Q13563 968 aa33.69■■■□□ 2.98
TRIM54-201ENST00000296098 ZCCHC11Q5TAX3 1644 aaKnown RBP33.68■■■□□ 2.98
TRIM54-201ENST00000296098 MAST1Q9Y2H9 1570 aa33.67■■■□□ 2.98
TRIM54-201ENST00000296098 NUP155O75694 1391 aa33.66■■■□□ 2.98
TRIM54-201ENST00000296098 UHRF1BP1LA0JNW5 1464 aa33.66■■■□□ 2.98
TRIM54-201ENST00000296098 RSPH4AQ5TD94 716 aa33.66■■■□□ 2.98
TRIM54-201ENST00000296098 NBPF8Q3BBV2 869 aa33.65■■■□□ 2.98
TRIM54-201ENST00000296098 WASHC2AQ641Q2 1341 aa33.64■■■□□ 2.98
TRIM54-201ENST00000296098 PLEKHH2Q8IVE3 1493 aa33.61■■■□□ 2.97
TRIM54-201ENST00000296098 POLR1AO95602 1720 aaPredicted RBP33.56■■■□□ 2.96
TRIM54-201ENST00000296098 PLXNC1O60486 1568 aa33.55■■■□□ 2.96
TRIM54-201ENST00000296098 SPATA31E1Q6ZUB1 1445 aa33.53■■■□□ 2.96
TRIM54-201ENST00000296098 CNTLNQ9NXG0 1405 aa33.51■■■□□ 2.96
TRIM54-201ENST00000296098 UNC13BO14795 1591 aa33.51■■■□□ 2.96
TRIM54-201ENST00000296098 FAM135AQ9P2D6 1515 aa33.51■■■□□ 2.96
TRIM54-201ENST00000296098 ARHGEF12Q9NZN5 1544 aa33.5■■■□□ 2.95
TRIM54-201ENST00000296098 CCDC7Q96M83 1385 aa33.49■■■□□ 2.95
TRIM54-201ENST00000296098 PLCH2O75038 1416 aa33.47■■■□□ 2.95
TRIM54-201ENST00000296098 UHRF1BP1Q6BDS2 1440 aa33.43■■■□□ 2.94
TRIM54-201ENST00000296098 ABCC1P33527 1531 aa33.42■■■□□ 2.94
TRIM54-201ENST00000296098 C11orf95C9JLR9 678 aaPredicted RBP33.41■■■□□ 2.94
TRIM54-201ENST00000296098 DUOX2Q9NRD8 1548 aa33.4■■■□□ 2.94
TRIM54-201ENST00000296098 RALGAPBQ86X10 1494 aa33.38■■■□□ 2.93
TRIM54-201ENST00000296098 IQGAP3Q86VI3 1631 aa33.38■■■□□ 2.93
TRIM54-201ENST00000296098 PELP1Q8IZL8 1130 aaKnown RBP33.37■■■□□ 2.93
TRIM54-201ENST00000296098 KDM5CP41229 1560 aa33.37■■■□□ 2.93
TRIM54-201ENST00000296098 ARAP3Q8WWN8 1544 aa33.36■■■□□ 2.93
TRIM54-201ENST00000296098 EFCAB2Q5VUJ9 269 aa33.36■■■□□ 2.93
TRIM54-201ENST00000296098 ZNF326Q5BKZ1 582 aaKnown RBP33.35■■■□□ 2.93
TRIM54-201ENST00000296098 USP47Q96K76 1375 aa33.34■■■□□ 2.93
TRIM54-201ENST00000296098 KIF7Q2M1P5 1343 aa33.34■■■□□ 2.93
TRIM54-201ENST00000296098 ERBINQ96RT1 1412 aa33.33■■■□□ 2.93
TRIM54-201ENST00000296098 MAGI2Q86UL8 1455 aa33.31■■■□□ 2.92
TRIM54-201ENST00000296098 SUPT16HQ9Y5B9 1047 aaKnown RBP33.28■■■□□ 2.92
TRIM54-201ENST00000296098 WDR7Q9Y4E6 1490 aa33.28■■■□□ 2.92
TRIM54-201ENST00000296098 BCORL1Q5H9F3 1711 aa33.27■■■□□ 2.92
TRIM54-201ENST00000296098 CCDC144AA2RUR9 1427 aa33.26■■■□□ 2.91
TRIM54-201ENST00000296098 TRAPPC8Q9Y2L5 1435 aa33.25■■■□□ 2.91
TRIM54-201ENST00000296098 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.21■■■□□ 2.91
TRIM54-201ENST00000296098 PLA2R1Q13018 1463 aa33.19■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms