RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 CENPBP07199 599 aaPredicted RBP16.2■□□□□ 0.18
MSH3-201ENST00000265081 PPP1R15AO75807 674 aaPredicted RBP16.19■□□□□ 0.18
MSH3-201ENST00000265081 ARHGEF5Q12774 1597 aa16.18■□□□□ 0.18
MSH3-201ENST00000265081 POLR1AO95602 1720 aaPredicted RBP16.17■□□□□ 0.18
MSH3-201ENST00000265081 PRG4Q92954 1404 aaPredicted RBP16.17■□□□□ 0.18
MSH3-201ENST00000265081 SIN3AQ96ST3 1273 aa16.17■□□□□ 0.18
MSH3-201ENST00000265081 PREX2Q70Z35 1606 aa16.17■□□□□ 0.18
MSH3-201ENST00000265081 KDM5DQ9BY66 1539 aa16.16■□□□□ 0.18
MSH3-201ENST00000265081 ATP10BO94823 1461 aa16.16■□□□□ 0.18
MSH3-201ENST00000265081 CDC42BPBQ9Y5S2 1711 aa16.14■□□□□ 0.17
MSH3-201ENST00000265081 CHMP7Q8WUX9 453 aaPredicted RBP16.13■□□□□ 0.17
MSH3-201ENST00000265081 CLASP1Q7Z460 1538 aa16.12■□□□□ 0.17
MSH3-201ENST00000265081 PZPP20742 1482 aa16.11■□□□□ 0.17
MSH3-201ENST00000265081 TEX14Q8IWB6 1497 aa16.11■□□□□ 0.17
MSH3-201ENST00000265081 JPH4Q96JJ6 628 aa16.11■□□□□ 0.17
MSH3-201ENST00000265081 MAST1Q9Y2H9 1570 aa16.11■□□□□ 0.17
MSH3-201ENST00000265081 RPRD2Q5VT52 1461 aaKnown RBP16.11■□□□□ 0.17
MSH3-201ENST00000265081 NCOA1Q15788 1441 aa16.1■□□□□ 0.17
MSH3-201ENST00000265081 CDK11AQ9UQ88 783 aaPredicted RBP16.09■□□□□ 0.17
MSH3-201ENST00000265081 MBD5Q9P267 1494 aa16.08■□□□□ 0.16
MSH3-201ENST00000265081 ANKRD30BQ9BXX2 1392 aa16.08■□□□□ 0.16
MSH3-201ENST00000265081 SAMD9LQ8IVG5 1584 aa16.07■□□□□ 0.16
MSH3-201ENST00000265081 TONSLQ96HA7 1378 aa16.06■□□□□ 0.16
MSH3-201ENST00000265081 ABCC2Q92887 1545 aa16.04■□□□□ 0.16
MSH3-201ENST00000265081 PTPRGP23470 1445 aa16.03■□□□□ 0.16
MSH3-201ENST00000265081 UHRF1BP1LA0JNW5 1464 aa16.02■□□□□ 0.15
MSH3-201ENST00000265081 PLXNC1O60486 1568 aa16.02■□□□□ 0.15
MSH3-201ENST00000265081 MYO5CQ9NQX4 1742 aa16.01■□□□□ 0.15
MSH3-201ENST00000265081 TTC37Q6PGP7 1564 aa16.01■□□□□ 0.15
MSH3-201ENST00000265081 ZNF644Q9H582 1327 aaPredicted RBP16.01■□□□□ 0.15
MSH3-201ENST00000265081 UNC13BO14795 1591 aa16.01■□□□□ 0.15
MSH3-201ENST00000265081 MPHOSPH9Q99550 1183 aa16.01■□□□□ 0.15
MSH3-201ENST00000265081 RRP7BPQ9NSQ0 103 aa16.01■□□□□ 0.15
MSH3-201ENST00000265081 GTF3C3Q9Y5Q9 886 aa15.99■□□□□ 0.15
MSH3-201ENST00000265081 ERCC6L2Q5T890 1561 aa15.99■□□□□ 0.15
MSH3-201ENST00000265081 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.99■□□□□ 0.15
MSH3-201ENST00000265081 ZCCHC11Q5TAX3 1644 aaKnown RBP15.97■□□□□ 0.15
MSH3-201ENST00000265081 SPATA31E1Q6ZUB1 1445 aa15.96■□□□□ 0.15
MSH3-201ENST00000265081 C9orf84Q5VXU9 1444 aa15.95■□□□□ 0.14
MSH3-201ENST00000265081 KIAA1107Q9UPP5 1409 aa15.95■□□□□ 0.14
MSH3-201ENST00000265081 CHIC2Q9UKJ5 165 aa15.95■□□□□ 0.14
MSH3-201ENST00000265081 ARHGEF12Q9NZN5 1544 aa15.94■□□□□ 0.14
MSH3-201ENST00000265081 ANKRD30AQ9BXX3 1397 aa15.94■□□□□ 0.14
MSH3-201ENST00000265081 ARAP3Q8WWN8 1544 aa15.94■□□□□ 0.14
MSH3-201ENST00000265081 CCDC141Q6ZP82 1450 aa15.93■□□□□ 0.14
MSH3-201ENST00000265081 MAGI2Q86UL8 1455 aa15.93■□□□□ 0.14
MSH3-201ENST00000265081 CFDP1Q9UEE9 299 aaPredicted RBP15.93■□□□□ 0.14
MSH3-201ENST00000265081 UHRF1BP1Q6BDS2 1440 aa15.92■□□□□ 0.14
MSH3-201ENST00000265081 IQGAP3Q86VI3 1631 aa15.92■□□□□ 0.14
MSH3-201ENST00000265081 ANKRD50Q9ULJ7 1429 aa15.91■□□□□ 0.14
MSH3-201ENST00000265081 CCER2I3L3R5 266 aa15.91■□□□□ 0.14
MSH3-201ENST00000265081 KDM5CP41229 1560 aa15.9■□□□□ 0.14
MSH3-201ENST00000265081 ARID3CA6NKF2 412 aa15.89■□□□□ 0.13
MSH3-201ENST00000265081 PLEKHD1A6NEE1 506 aa15.89■□□□□ 0.13
MSH3-201ENST00000265081 SYCP2Q9BX26 1530 aa15.87■□□□□ 0.13
MSH3-201ENST00000265081 PLEKHH2Q8IVE3 1493 aa15.87■□□□□ 0.13
MSH3-201ENST00000265081 FBLN2P98095 1184 aa15.87■□□□□ 0.13
MSH3-201ENST00000265081 YTHDC1Q96MU7 727 aaKnown RBP15.86■□□□□ 0.13
MSH3-201ENST00000265081 ABCC1P33527 1531 aa15.86■□□□□ 0.13
MSH3-201ENST00000265081 LAMC1P11047 1609 aa15.85■□□□□ 0.13
MSH3-201ENST00000265081 FAM135AQ9P2D6 1515 aa15.84■□□□□ 0.13
MSH3-201ENST00000265081 L3MBTL2Q969R5 705 aa15.84■□□□□ 0.13
MSH3-201ENST00000265081 BCORL1Q5H9F3 1711 aa15.83■□□□□ 0.13
MSH3-201ENST00000265081 RALGAPBQ86X10 1494 aa15.83■□□□□ 0.13
MSH3-201ENST00000265081 DEPDC5O75140 1603 aa15.83■□□□□ 0.12
MSH3-201ENST00000265081 ABCA9Q8IUA7 1624 aa15.83■□□□□ 0.12
MSH3-201ENST00000265081 RSPH4AQ5TD94 716 aa15.83■□□□□ 0.12
MSH3-201ENST00000265081 DDX10Q13206 875 aaKnown RBP15.82■□□□□ 0.12
MSH3-201ENST00000265081 TRIM52Q96A61 297 aa15.82■□□□□ 0.12
MSH3-201ENST00000265081 CNTLNQ9NXG0 1405 aa15.82■□□□□ 0.12
MSH3-201ENST00000265081 ATP10AO60312 1499 aa15.82■□□□□ 0.12
MSH3-201ENST00000265081 E9PCH4 1651 aa15.82■□□□□ 0.12
MSH3-201ENST00000265081 WASHC2AQ641Q2 1341 aa15.82■□□□□ 0.12
MSH3-201ENST00000265081 DUOX2Q9NRD8 1548 aa15.81■□□□□ 0.12
MSH3-201ENST00000265081 ARHGAP5Q13017 1502 aa15.8■□□□□ 0.12
MSH3-201ENST00000265081 TRPM1Q7Z4N2 1603 aa15.8■□□□□ 0.12
MSH3-201ENST00000265081 PLCH2O75038 1416 aa15.8■□□□□ 0.12
MSH3-201ENST00000265081 KIF15Q9NS87 1388 aa15.8■□□□□ 0.12
MSH3-201ENST00000265081 HSPA5P11021 654 aaKnown RBP15.79■□□□□ 0.12
MSH3-201ENST00000265081 NBPF8Q3BBV2 869 aa15.79■□□□□ 0.12
MSH3-201ENST00000265081 ERBINQ96RT1 1412 aa15.79■□□□□ 0.12
MSH3-201ENST00000265081 PELP1Q8IZL8 1130 aaKnown RBP15.78■□□□□ 0.12
MSH3-201ENST00000265081 SLC4A1APQ9BWU0 796 aaKnown RBP15.78■□□□□ 0.12
MSH3-201ENST00000265081 KCNH8Q96L42 1107 aa15.78■□□□□ 0.12
MSH3-201ENST00000265081 CCDC7Q96M83 1385 aa15.77■□□□□ 0.11
MSH3-201ENST00000265081 INO80Q9ULG1 1556 aaPredicted RBP15.77■□□□□ 0.11
MSH3-201ENST00000265081 FOXD1Q16676 465 aa15.77■□□□□ 0.11
MSH3-201ENST00000265081 RNF17Q9BXT8 1623 aaKnown RBP15.75■□□□□ 0.11
MSH3-201ENST00000265081 EIF4G2P78344 907 aaKnown RBP eCLIP15.75■□□□□ 0.11
MSH3-201ENST00000265081 ZFYVE16Q7Z3T8 1539 aa15.75■□□□□ 0.11
MSH3-201ENST00000265081 NEURL4Q96JN8 1562 aa15.74■□□□□ 0.11
MSH3-201ENST00000265081 VWDEQ8N2E2 1590 aa15.74■□□□□ 0.11
MSH3-201ENST00000265081 EIF2AK4Q9P2K8 1649 aaKnown RBP15.73■□□□□ 0.11
MSH3-201ENST00000265081 PLA2R1Q13018 1463 aa15.73■□□□□ 0.11
MSH3-201ENST00000265081 RTEL1-TNFRSF6BF6WH68 1400 aa15.73■□□□□ 0.11
MSH3-201ENST00000265081 HIRIP3Q9BW71 556 aaPredicted RBP15.72■□□□□ 0.11
MSH3-201ENST00000265081 WDR7Q9Y4E6 1490 aa15.71■□□□□ 0.11
MSH3-201ENST00000265081 ARID4BQ4LE39 1312 aaPredicted RBP15.71■□□□□ 0.11
MSH3-201ENST00000265081 ANP32CO43423 234 aa15.71■□□□□ 0.1
MSH3-201ENST00000265081 NUP155O75694 1391 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms