RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 PTMSP20962 102 aa14.22□□□□□ -0.13
MSH6-201ENST00000234420 CREBRFQ8IUR6 639 aa14.22□□□□□ -0.13
MSH6-201ENST00000234420 TIMELESSQ9UNS1 1208 aa14.21□□□□□ -0.13
MSH6-201ENST00000234420 KAT6BQ8WYB5 2073 aa14.2□□□□□ -0.14
MSH6-201ENST00000234420 APPP05067 770 aa14.2□□□□□ -0.14
MSH6-201ENST00000234420 KIAA2012Q0VF49 1180 aa14.19□□□□□ -0.14
MSH6-201ENST00000234420 PODXL2Q9NZ53 605 aa14.19□□□□□ -0.14
MSH6-201ENST00000234420 RBM19Q9Y4C8 960 aaKnown RBP14.19□□□□□ -0.14
MSH6-201ENST00000234420 SETQ01105 290 aaPredicted RBP14.18□□□□□ -0.14
MSH6-201ENST00000234420 GOLGA6L1Q8N7Z2 621 aa14.17□□□□□ -0.14
MSH6-201ENST00000234420 GOLGA6L4A6NEF3 574 aa14.17□□□□□ -0.14
MSH6-201ENST00000234420 NUTM2FA1L443 756 aa14.16□□□□□ -0.14
MSH6-201ENST00000234420 FRAT1Q92837 279 aaPredicted RBP14.16□□□□□ -0.14
MSH6-201ENST00000234420 B4GALNT3Q6L9W6 998 aa14.16□□□□□ -0.14
MSH6-201ENST00000234420 FRAT2O75474 233 aaPredicted RBP14.16□□□□□ -0.14
MSH6-201ENST00000234420 SCRIBQ14160 1630 aa14.15□□□□□ -0.14
MSH6-201ENST00000234420 PPP4R2Q9NY27 417 aa14.14□□□□□ -0.15
MSH6-201ENST00000234420 RSPH6AQ9H0K4 717 aa14.14□□□□□ -0.15
MSH6-201ENST00000234420 GTF2E1P29083 439 aaPredicted RBP14.14□□□□□ -0.15
MSH6-201ENST00000234420 TAF7LQ5H9L4 462 aa14.14□□□□□ -0.15
MSH6-201ENST00000234420 MAPK8IP3Q9UPT6 1336 aa14.13□□□□□ -0.15
MSH6-201ENST00000234420 PATL2C9JE40 543 aaKnown RBP14.13□□□□□ -0.15
MSH6-201ENST00000234420 HSCBQ8IWL3 235 aa14.13□□□□□ -0.15
MSH6-201ENST00000234420 WDR70Q9NW82 654 aa14.13□□□□□ -0.15
MSH6-201ENST00000234420 CC2D1BQ5T0F9 858 aaKnown RBP14.12□□□□□ -0.15
MSH6-201ENST00000234420 ZNF771Q7L3S4 317 aaPredicted RBP14.12□□□□□ -0.15
MSH6-201ENST00000234420 SRPK2P78362 688 aaKnown RBP14.12□□□□□ -0.15
MSH6-201ENST00000234420 EIF4G2P78344 907 aaKnown RBP eCLIP14.11□□□□□ -0.15
MSH6-201ENST00000234420 EVA1CP58658 441 aa14.11□□□□□ -0.15
MSH6-201ENST00000234420 PKNOX2Q96KN3 472 aa14.1□□□□□ -0.15
MSH6-201ENST00000234420 SYTL4Q96C24 671 aaPredicted RBP14.1□□□□□ -0.15
MSH6-201ENST00000234420 CFAP53Q96M91 514 aa14.09□□□□□ -0.15
MSH6-201ENST00000234420 LTV1Q96GA3 475 aaPredicted RBP14.09□□□□□ -0.15
MSH6-201ENST00000234420 NUTM2DQ5VT03 806 aaPredicted RBP14.08□□□□□ -0.16
MSH6-201ENST00000234420 GORABQ5T7V8 394 aa14.07□□□□□ -0.16
MSH6-201ENST00000234420 GOLGA6L3A6NEY3 463 aa14.05□□□□□ -0.16
MSH6-201ENST00000234420 RTF1Q92541 710 aaKnown RBP14.05□□□□□ -0.16
MSH6-201ENST00000234420 HSP90B1P14625 803 aaKnown RBP14.05□□□□□ -0.16
MSH6-201ENST00000234420 CTDP1Q9Y5B0 961 aaPredicted RBP14.05□□□□□ -0.16
MSH6-201ENST00000234420 KNSTRNQ9Y448 316 aa14.04□□□□□ -0.16
MSH6-201ENST00000234420 SLKQ9H2G2 1235 aaPredicted RBP14.03□□□□□ -0.16
MSH6-201ENST00000234420 GGT6Q6P531 493 aa14.03□□□□□ -0.16
MSH6-201ENST00000234420 TCEAL9Q9UHQ7 104 aa14.03□□□□□ -0.16
MSH6-201ENST00000234420 MARCH6O60337 910 aa14.02□□□□□ -0.16
MSH6-201ENST00000234420 NGEFQ8N5V2 710 aa14.02□□□□□ -0.16
MSH6-201ENST00000234420 RASSF8Q8NHQ8 419 aa14.02□□□□□ -0.17
MSH6-201ENST00000234420 TRIM34Q9BYJ4 488 aa14.02□□□□□ -0.17
MSH6-201ENST00000234420 CFAP44Q96MT7 982 aa14.01□□□□□ -0.17
MSH6-201ENST00000234420 IBSPP21815 317 aaPredicted RBP14.01□□□□□ -0.17
MSH6-201ENST00000234420 TOMM22Q9NS69 142 aa14.01□□□□□ -0.17
MSH6-201ENST00000234420 MTUS2Q5JR59 1369 aa14□□□□□ -0.17
MSH6-201ENST00000234420 PLEKHD1A6NEE1 506 aa13.99□□□□□ -0.17
MSH6-201ENST00000234420 GBP4Q96PP9 640 aa13.98□□□□□ -0.17
MSH6-201ENST00000234420 PRKCSHP14314 528 aaPredicted RBP13.98□□□□□ -0.17
MSH6-201ENST00000234420 FAM13BQ9NYF5 915 aa13.96□□□□□ -0.17
MSH6-201ENST00000234420 SLC4A3P48751 1232 aa13.95□□□□□ -0.18
MSH6-201ENST00000234420 USP35Q9P2H5 1018 aa13.95□□□□□ -0.18
MSH6-201ENST00000234420 PES1O00541 588 aaKnown RBP13.94□□□□□ -0.18
MSH6-201ENST00000234420 PPM1FP49593 454 aaPredicted RBP13.94□□□□□ -0.18
MSH6-201ENST00000234420 NUDCQ9Y266 331 aa13.93□□□□□ -0.18
MSH6-201ENST00000234420 EIF4G1Q04637 1599 aaKnown RBP13.91□□□□□ -0.18
MSH6-201ENST00000234420 CCAR2Q8N163 923 aaKnown RBP13.91□□□□□ -0.18
MSH6-201ENST00000234420 TSHZ2Q9NRE2 1034 aa13.9□□□□□ -0.18
MSH6-201ENST00000234420 PIP4K2BP78356 416 aa13.89□□□□□ -0.19
MSH6-201ENST00000234420 SYAP1Q96A49 352 aaPredicted RBP13.89□□□□□ -0.19
MSH6-201ENST00000234420 NOL8Q76FK4 1167 aaKnown RBP13.89□□□□□ -0.19
MSH6-201ENST00000234420 CCAR1Q8IX12 1150 aaKnown RBP13.89□□□□□ -0.19
MSH6-201ENST00000234420 PAXIP1Q6ZW49 1069 aaPredicted RBP13.89□□□□□ -0.19
MSH6-201ENST00000234420 CEP89Q96ST8 783 aa13.88□□□□□ -0.19
MSH6-201ENST00000234420 RRP12Q5JTH9 1297 aaKnown RBP13.88□□□□□ -0.19
MSH6-201ENST00000234420 CARD11Q9BXL7 1154 aa13.88□□□□□ -0.19
MSH6-201ENST00000234420 MCCP23508 829 aa13.87□□□□□ -0.19
MSH6-201ENST00000234420 HDGFP51858 240 aaKnown RBP13.87□□□□□ -0.19
MSH6-201ENST00000234420 SF3B2Q13435 895 aaKnown RBP13.87□□□□□ -0.19
MSH6-201ENST00000234420 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.86□□□□□ -0.19
MSH6-201ENST00000234420 CALD1Q05682 793 aaKnown RBP13.86□□□□□ -0.19
MSH6-201ENST00000234420 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.86□□□□□ -0.191e-6■■■■■ 44.2
MSH6-201ENST00000234420 TPM4P67936 248 aa13.86□□□□□ -0.19
MSH6-201ENST00000234420 SLC4A10Q6U841 1118 aa13.86□□□□□ -0.19
MSH6-201ENST00000234420 MTMR7Q9Y216 660 aa13.85□□□□□ -0.19
MSH6-201ENST00000234420 IPO9Q96P70 1041 aaKnown RBP13.85□□□□□ -0.19
MSH6-201ENST00000234420 NGDNQ8NEJ9 315 aaKnown RBP13.85□□□□□ -0.19
MSH6-201ENST00000234420 HTATSF1O43719 755 aaKnown RBP13.85□□□□□ -0.19
MSH6-201ENST00000234420 CFDP1Q9UEE9 299 aaPredicted RBP13.85□□□□□ -0.19
MSH6-201ENST00000234420 TEX35Q5T0J7 233 aa13.84□□□□□ -0.19
MSH6-201ENST00000234420 KIAA1211Q6ZU35 1233 aa13.84□□□□□ -0.19
MSH6-201ENST00000234420 PAF1Q8N7H5 531 aa13.84□□□□□ -0.19
MSH6-201ENST00000234420 TRIM6-TRIM34B2RNG4 842 aa13.84□□□□□ -0.19
MSH6-201ENST00000234420 MYCNP04198 464 aaPredicted RBP13.84□□□□□ -0.19
MSH6-201ENST00000234420 GPS2Q13227 327 aa13.83□□□□□ -0.19
MSH6-201ENST00000234420 NUTM2BA6NNL0 878 aaPredicted RBP13.83□□□□□ -0.19
MSH6-201ENST00000234420 NUTM2EB1AL46 878 aaPredicted RBP13.83□□□□□ -0.19
MSH6-201ENST00000234420 NUTM2AQ8IVF1 878 aaPredicted RBP13.83□□□□□ -0.19
MSH6-201ENST00000234420 ZNF592Q92610 1267 aa13.83□□□□□ -0.2
MSH6-201ENST00000234420 FOXD4L1Q9NU39 408 aa13.83□□□□□ -0.2
MSH6-201ENST00000234420 FYB1O15117 783 aa13.83□□□□□ -0.2
MSH6-201ENST00000234420 NOM1Q5C9Z4 860 aaKnown RBP13.82□□□□□ -0.2
MSH6-201ENST00000234420 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.82□□□□□ -0.2
MSH6-201ENST00000234420 PLCD3Q8N3E9 789 aa13.82□□□□□ -0.2
MSH6-201ENST00000234420 TPM3P06753 285 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 1353.2 ms