RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 LSM12Q3MHD2 195 aaKnown RBP1.4□□□□□ -2.19
VPS35-212ENST00000640313 ARHGEF18Q6ZSZ5 1173 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 GLCCI1Q86VQ1 547 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 NETO2Q8NC67 525 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 EDAQ92838 391 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 CCDC97Q96F63 343 aaPredicted RBP1.4□□□□□ -2.19
VPS35-212ENST00000640313 PEX11GQ96HA9 241 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 AGAP2Q99490 1192 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 SLC12A9Q9BXP2 914 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 BCAS3Q9H6U6 928 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 KLHL3Q9UH77 587 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 U2SURPO15042 1029 aaKnown RBP1.39□□□□□ -2.19
VPS35-212ENST00000640313 FGF10O15520 208 aaPredicted RBP1.39□□□□□ -2.19
VPS35-212ENST00000640313 BPNT1O95861 308 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 GSNP06396 782 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 GSTM1P09488 218 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 ZNF28P17035 718 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 L1CAMP32004 1257 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 CCNFP41002 786 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 NRN1LQ496H8 165 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 MRGPRGQ86SM5 289 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 USP48Q86UV5 1035 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 TXNDC2Q86VQ3 553 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 NAT16Q8N8M0 369 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 NEU4Q8WWR8 484 aaPredicted RBP1.39□□□□□ -2.19
VPS35-212ENST00000640313 GATAD2BQ8WXI9 593 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 YTHDC1Q96MU7 727 aaKnown RBP1.39□□□□□ -2.19
VPS35-212ENST00000640313 SETDB2Q96T68 719 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 PTPN18Q99952 460 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 MEGF9Q9H1U4 602 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 JADE2Q9NQC1 790 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 DCTN4Q9UJW0 460 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 NUDT5Q9UKK9 219 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 POLR3KQ9Y2Y1 108 aaPredicted RBP1.39□□□□□ -2.19
VPS35-212ENST00000640313 DMRT1Q9Y5R6 373 aa1.39□□□□□ -2.19
VPS35-212ENST00000640313 CARNS1A5YM72 827 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 INO80B-WBP1J3KQ70 363 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 MEIS1O00470 390 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 B4GALT4O60513 344 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 CLEC3AO75596 197 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 TBC1D8O95759 1140 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 ERBB2P04626 1255 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 CYP1A1P04798 512 aaPredicted RBP1.38□□□□□ -2.19
VPS35-212ENST00000640313 RAG1P15918 1043 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 TACR1P25103 407 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 NOP2P46087 812 aaKnown RBP1.38□□□□□ -2.19
VPS35-212ENST00000640313 ITGA1P56199 1179 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 ZC3H6P61129 1189 aaKnown RBP1.38□□□□□ -2.19
VPS35-212ENST00000640313 DAB2P98082 770 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 LMNB2Q03252 620 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 FMR1Q06787 632 aaKnown RBP eCLIP1.38□□□□□ -2.19
VPS35-212ENST00000640313 MLECQ14165 292 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 USP39Q53GS9 565 aaKnown RBP1.38□□□□□ -2.19
VPS35-212ENST00000640313 ARSHQ5FYA8 562 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 CRTC3Q6UUV7 619 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 BNC2Q6ZN30 1099 aaPredicted RBP1.38□□□□□ -2.19
VPS35-212ENST00000640313 CABP7Q86V35 215 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 KBTBD2Q8IY47 623 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 KLHL36Q8N4N3 616 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 PHC3Q8NDX5 983 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 LARP4BQ92615 738 aaKnown RBP1.38□□□□□ -2.19
VPS35-212ENST00000640313 EXTL1Q92935 676 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 PTCHD1Q96NR3 888 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 PRRX2Q99811 253 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 INO80BQ9C086 356 aaPredicted RBP1.38□□□□□ -2.19
VPS35-212ENST00000640313 TMEM168Q9H0V1 697 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 CSRNP2Q9H175 543 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 SEC61A2Q9H9S3 476 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 RXFP1Q9HBX9 757 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 GFOD1Q9NXC2 390 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 PCDHB12Q9Y5F1 795 aa1.38□□□□□ -2.19
VPS35-212ENST00000640313 PROB1E7EW31 1015 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 FOXS1O43638 330 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 ONECUT2O95948 504 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 F13A1P00488 732 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 EIF4BP23588 611 aaKnown RBP1.37□□□□□ -2.19
VPS35-212ENST00000640313 IL13P35225 146 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 ADRA1BP35368 520 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 MAPK8P45983 427 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 KRTAP10-6P60371 365 aaPredicted RBP1.37□□□□□ -2.19
VPS35-212ENST00000640313 DGCR2P98153 550 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 RBM10P98175 930 aaKnown RBP1.37□□□□□ -2.19
VPS35-212ENST00000640313 ATP2B2Q01814 1243 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 COL10A1Q03692 680 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 AUHQ13825 339 aaKnown RBP1.37□□□□□ -2.19
VPS35-212ENST00000640313 MAP3K11Q16584 847 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 FNDC7Q5VTL7 733 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 AGBL4Q5VU57 503 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 CWF19L1Q69YN2 538 aaKnown RBP1.37□□□□□ -2.19
VPS35-212ENST00000640313 TCTN3Q6NUS6 607 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 ETV3LQ6ZN32 361 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 MIB1Q86YT6 1006 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 ULK2Q8IYT8 1036 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 LZTR1Q8N653 840 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 RGS22Q8NE09 1264 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 CACTINQ8WUQ7 758 aaKnown RBP1.37□□□□□ -2.19
VPS35-212ENST00000640313 ADOQ96SZ5 270 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 SYT3Q9BQG1 590 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 MTA3Q9BTC8 594 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 NOC4LQ9BVI4 516 aaKnown RBP1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms