RNA–Protein interactions for RNA: ENST00000600117.1

CCDC9-205, Transcript of coiled-coil domain containing 9, humanhuman

TSL 2

Gene CCDC9, Length 580 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-205ENST00000600117 ERCC3P19447 782 aa21.79■■□□□ 1.08
CCDC9-205ENST00000600117 FBXO11Q86XK2 927 aa21.79■■□□□ 1.08
CCDC9-205ENST00000600117 CCDC83Q8IWF9 413 aa21.79■■□□□ 1.08
CCDC9-205ENST00000600117 RNF26Q9BY78 433 aaPredicted RBP21.79■■□□□ 1.08
CCDC9-205ENST00000600117 C11orf49Q9H6J7 331 aa21.79■■□□□ 1.08
CCDC9-205ENST00000600117 HMX1Q9NP08 348 aaPredicted RBP21.79■■□□□ 1.08
CCDC9-205ENST00000600117 V9GY48 417 aaPredicted RBP21.79■■□□□ 1.08
CCDC9-205ENST00000600117 PRPF3O43395 683 aaKnown RBP21.78■■□□□ 1.08
CCDC9-205ENST00000600117 DTNBO60941 627 aa21.78■■□□□ 1.08
CCDC9-205ENST00000600117 PPFIA3O75145 1194 aa21.78■■□□□ 1.08
CCDC9-205ENST00000600117 COPB2P35606 906 aa21.78■■□□□ 1.08
CCDC9-205ENST00000600117 CPLX2Q6PUV4 134 aaKnown RBP21.78■■□□□ 1.08
CCDC9-205ENST00000600117 AMNQ9BXJ7 453 aa21.78■■□□□ 1.08
CCDC9-205ENST00000600117 UBE2OQ9C0C9 1292 aaKnown RBP21.78■■□□□ 1.08
CCDC9-205ENST00000600117 PNMA2Q9UL42 364 aa21.78■■□□□ 1.08
CCDC9-205ENST00000600117 ALAS1P13196 640 aa21.77■■□□□ 1.08
CCDC9-205ENST00000600117 MAPK4P31152 587 aa21.77■■□□□ 1.08
CCDC9-205ENST00000600117 SLC4A3P48751 1232 aa21.77■■□□□ 1.08
CCDC9-205ENST00000600117 PKN1Q16512 942 aa21.77■■□□□ 1.08
CCDC9-205ENST00000600117 TKFCQ3LXA3 575 aa21.77■■□□□ 1.08
CCDC9-205ENST00000600117 USH1GQ495M9 461 aa21.77■■□□□ 1.08
CCDC9-205ENST00000600117 NCAPG2Q86XI2 1143 aa21.77■■□□□ 1.08
CCDC9-205ENST00000600117 NSUN7Q8NE18 718 aaKnown RBP21.77■■□□□ 1.08
CCDC9-205ENST00000600117 SLC26A6Q9BXS9 759 aa21.77■■□□□ 1.08
CCDC9-205ENST00000600117 MROH8Q9H579 483 aa21.77■■□□□ 1.08
CCDC9-205ENST00000600117 RNF146Q9NTX7 359 aa21.77■■□□□ 1.08
CCDC9-205ENST00000600117 SEC63Q9UGP8 760 aaKnown RBP21.77■■□□□ 1.08
CCDC9-205ENST00000600117 OGDHLQ9ULD0 1010 aa21.77■■□□□ 1.08
CCDC9-205ENST00000600117 TTC28Q96AY4 2481 aa21.77■■□□□ 1.07
CCDC9-205ENST00000600117 CDKL5O76039 1030 aa21.76■■□□□ 1.07
CCDC9-205ENST00000600117 MUM1L1Q5H9M0 696 aa21.76■■□□□ 1.07
CCDC9-205ENST00000600117 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.76■■□□□ 1.07
CCDC9-205ENST00000600117 GPR142Q7Z601 462 aa21.76■■□□□ 1.07
CCDC9-205ENST00000600117 CHST13Q8NET6 341 aa21.76■■□□□ 1.07
CCDC9-205ENST00000600117 CLEC4DQ8WXI8 215 aa21.76■■□□□ 1.07
CCDC9-205ENST00000600117 TRERF1Q96PN7 1200 aa21.76■■□□□ 1.07
CCDC9-205ENST00000600117 GJD2Q9UKL4 321 aa21.76■■□□□ 1.07
CCDC9-205ENST00000600117 STK36Q9NRP7 1315 aa21.76■■□□□ 1.07
CCDC9-205ENST00000600117 JAK2O60674 1132 aa21.75■■□□□ 1.07
CCDC9-205ENST00000600117 SSRP1Q08945 709 aaKnown RBP21.75■■□□□ 1.07
CCDC9-205ENST00000600117 PFKFB3Q16875 520 aaPredicted RBP21.75■■□□□ 1.07
CCDC9-205ENST00000600117 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.75■■□□□ 1.07
CCDC9-205ENST00000600117 LLPHQ9BRT6 129 aaKnown RBP21.75■■□□□ 1.07
CCDC9-205ENST00000600117 HOMER2Q9NSB8 354 aa21.75■■□□□ 1.07
CCDC9-205ENST00000600117 PCDHA1Q9Y5I3 950 aa21.75■■□□□ 1.07
CCDC9-205ENST00000600117 PLXNB2O15031 1838 aa21.75■■□□□ 1.07
CCDC9-205ENST00000600117 ABCB11O95342 1321 aa21.75■■□□□ 1.07
CCDC9-205ENST00000600117 PTPDC1A2A3K4 754 aa21.74■■□□□ 1.07
CCDC9-205ENST00000600117 TRIM32Q13049 653 aa21.74■■□□□ 1.07
CCDC9-205ENST00000600117 WWC2Q6AWC2 1192 aa21.74■■□□□ 1.07
CCDC9-205ENST00000600117 PLEKHH3Q7Z736 793 aa21.74■■□□□ 1.07
CCDC9-205ENST00000600117 TRIM22Q8IYM9 498 aa21.74■■□□□ 1.07
CCDC9-205ENST00000600117 SMARCC2Q8TAQ2 1214 aa21.74■■□□□ 1.07
CCDC9-205ENST00000600117 GPKOWQ92917 476 aaPredicted RBP eCLIP21.74■■□□□ 1.07
CCDC9-205ENST00000600117 ACAD9Q9H845 621 aa21.74■■□□□ 1.07
CCDC9-205ENST00000600117 FBXO40Q9UH90 709 aa21.74■■□□□ 1.07
CCDC9-205ENST00000600117 K7ELQ4 463 aaPredicted RBP21.73■■□□□ 1.07
CCDC9-205ENST00000600117 NFIBO00712 420 aa21.73■■□□□ 1.07
CCDC9-205ENST00000600117 OPLAHO14841 1288 aa21.73■■□□□ 1.07
CCDC9-205ENST00000600117 SCG2P13521 617 aa21.73■■□□□ 1.07
CCDC9-205ENST00000600117 FDPSP14324 419 aaKnown RBP21.73■■□□□ 1.07
CCDC9-205ENST00000600117 AKAP17AQ02040 695 aaKnown RBP21.73■■□□□ 1.07
CCDC9-205ENST00000600117 TRAF1Q13077 416 aa21.73■■□□□ 1.07
CCDC9-205ENST00000600117 CUL4AQ13619 759 aa21.73■■□□□ 1.07
CCDC9-205ENST00000600117 WDR78Q5VTH9 848 aa21.73■■□□□ 1.07
CCDC9-205ENST00000600117 TYW1BQ6NUM6 668 aa21.73■■□□□ 1.07
CCDC9-205ENST00000600117 MRPL11Q9Y3B7 192 aaKnown RBP21.73■■□□□ 1.07
CCDC9-205ENST00000600117 ZNF236Q9UL36 1845 aa21.73■■□□□ 1.07
CCDC9-205ENST00000600117 STXBP3O00186 592 aa21.72■■□□□ 1.07
CCDC9-205ENST00000600117 DEXIO95424 95 aa21.72■■□□□ 1.07
CCDC9-205ENST00000600117 PTPREP23469 700 aa21.72■■□□□ 1.07
CCDC9-205ENST00000600117 MORN1Q5T089 497 aa21.72■■□□□ 1.07
CCDC9-205ENST00000600117 HEATR3Q7Z4Q2 680 aa21.72■■□□□ 1.07
CCDC9-205ENST00000600117 CCAR1Q8IX12 1150 aaKnown RBP21.72■■□□□ 1.07
CCDC9-205ENST00000600117 PFASO15067 1338 aa21.72■■□□□ 1.07
CCDC9-205ENST00000600117 hCG_1984214I3L0E3 225 aa21.71■■□□□ 1.07
CCDC9-205ENST00000600117 GRB14Q14449 540 aa21.71■■□□□ 1.07
CCDC9-205ENST00000600117 MAP3K21Q5TCX8 1036 aa21.71■■□□□ 1.07
CCDC9-205ENST00000600117 FAM109BQ6ICB4 259 aaPredicted RBP21.71■■□□□ 1.07
CCDC9-205ENST00000600117 ABRAQ8N0Z2 381 aa21.71■■□□□ 1.07
CCDC9-205ENST00000600117 ZNF713Q8N859 430 aaPredicted RBP21.71■■□□□ 1.07
CCDC9-205ENST00000600117 TRIB2Q92519 343 aa21.71■■□□□ 1.07
CCDC9-205ENST00000600117 AIFM3Q96NN9 605 aa21.71■■□□□ 1.07
CCDC9-205ENST00000600117 A1CFQ9NQ94 594 aaKnown RBP21.71■■□□□ 1.07
CCDC9-205ENST00000600117 BARHL2Q9NY43 387 aa21.71■■□□□ 1.07
CCDC9-205ENST00000600117 ORC3Q9UBD5 711 aaPredicted RBP21.71■■□□□ 1.07
CCDC9-205ENST00000600117 ZNFX1Q9P2E3 1918 aaKnown RBP21.7■■□□□ 1.07
CCDC9-205ENST00000600117 SLC15A5A6NIM6 579 aa21.7■■□□□ 1.06
CCDC9-205ENST00000600117 POTEB2H3BUK9 544 aa21.7■■□□□ 1.06
CCDC9-205ENST00000600117 STRNO43815 780 aa21.7■■□□□ 1.06
CCDC9-205ENST00000600117 FCER1AP12319 257 aa21.7■■□□□ 1.06
CCDC9-205ENST00000600117 GHRHRQ02643 423 aa21.7■■□□□ 1.06
CCDC9-205ENST00000600117 PPP1R18Q6NYC8 613 aa21.7■■□□□ 1.06
CCDC9-205ENST00000600117 HSCBQ8IWL3 235 aa21.7■■□□□ 1.06
CCDC9-205ENST00000600117 TBC1D5Q92609 795 aa21.7■■□□□ 1.06
CCDC9-205ENST00000600117 USP6NLQ92738 828 aa21.7■■□□□ 1.06
CCDC9-205ENST00000600117 DDX11Q96FC9 970 aa21.7■■□□□ 1.06
CCDC9-205ENST00000600117 MMP19Q99542 508 aa21.7■■□□□ 1.06
CCDC9-205ENST00000600117 CWC22Q9HCG8 908 aaKnown RBP21.7■■□□□ 1.06
CCDC9-205ENST00000600117 IVNS1ABPQ9Y6Y0 642 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms