RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 CDKN1CP49918 316 aaPredicted RBP8.41□□□□□ -1.06
VPS50-212ENST00000476413 GPR85P60893 370 aa8.41□□□□□ -1.06
VPS50-212ENST00000476413 PCBP1Q15365 356 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS50-212ENST00000476413 MSMPQ1L6U9 139 aa8.41□□□□□ -1.06
VPS50-212ENST00000476413 ABHD17CQ6PCB6 329 aa8.41□□□□□ -1.06
VPS50-212ENST00000476413 CREG2Q8IUH2 290 aa8.41□□□□□ -1.06
VPS50-212ENST00000476413 RCBTB1Q8NDN9 531 aa8.41□□□□□ -1.06
VPS50-212ENST00000476413 TMEM52Q8NDY8 209 aa8.41□□□□□ -1.06
VPS50-212ENST00000476413 MAGEB10Q96LZ2 347 aaPredicted RBP8.41□□□□□ -1.06
VPS50-212ENST00000476413 PTCHD1Q96NR3 888 aa8.41□□□□□ -1.06
VPS50-212ENST00000476413 ERVK13-1Q9NX77 482 aa8.41□□□□□ -1.06
VPS50-212ENST00000476413 PCDHA8Q9Y5H6 950 aa8.41□□□□□ -1.06
VPS50-212ENST00000476413 ARVCFO00192 962 aa8.4□□□□□ -1.06
VPS50-212ENST00000476413 AQP7O14520 342 aa8.4□□□□□ -1.06
VPS50-212ENST00000476413 OPA1O60313 960 aa8.4□□□□□ -1.06
VPS50-212ENST00000476413 LTKP29376 864 aa8.4□□□□□ -1.06
VPS50-212ENST00000476413 CNGA1P29973 690 aa8.4□□□□□ -1.06
VPS50-212ENST00000476413 SOX5P35711 763 aa8.4□□□□□ -1.06
VPS50-212ENST00000476413 IGFALSP35858 605 aa8.4□□□□□ -1.06
VPS50-212ENST00000476413 SEPT7Q16181 437 aaKnown RBP8.4□□□□□ -1.06
VPS50-212ENST00000476413 PKN3Q6P5Z2 889 aa8.4□□□□□ -1.06
VPS50-212ENST00000476413 STRA8Q7Z7C7 330 aa8.4□□□□□ -1.06
VPS50-212ENST00000476413 KSR1Q8IVT5 923 aa8.4□□□□□ -1.06
VPS50-212ENST00000476413 ATP8A1Q9Y2Q0 1164 aa8.4□□□□□ -1.06
VPS50-212ENST00000476413 TGFB1P01137 390 aa8.39□□□□□ -1.07
VPS50-212ENST00000476413 PAMP19021 973 aa8.39□□□□□ -1.07
VPS50-212ENST00000476413 EGR3Q06889 387 aa8.39□□□□□ -1.07
VPS50-212ENST00000476413 KCNAB2Q13303 367 aa8.39□□□□□ -1.07
VPS50-212ENST00000476413 LBX2Q6XYB7 198 aa8.39□□□□□ -1.07
VPS50-212ENST00000476413 DDX42Q86XP3 938 aaKnown RBP eCLIP8.39□□□□□ -1.07
VPS50-212ENST00000476413 WFDC3Q8IUB2 231 aa8.39□□□□□ -1.07
VPS50-212ENST00000476413 IFNL3Q8IZI9 196 aa8.39□□□□□ -1.07
VPS50-212ENST00000476413 PPM1KQ8N3J5 372 aa8.39□□□□□ -1.07
VPS50-212ENST00000476413 PRPF38AQ8NAV1 312 aaKnown RBP8.39□□□□□ -1.07
VPS50-212ENST00000476413 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.39□□□□□ -1.07
VPS50-212ENST00000476413 DIO2Q92813 273 aa8.39□□□□□ -1.07
VPS50-212ENST00000476413 CDADC1Q9BWV3 514 aa8.39□□□□□ -1.07
VPS50-212ENST00000476413 DDX56Q9NY93 547 aaKnown RBP8.39□□□□□ -1.07
VPS50-212ENST00000476413 FBXL7Q9UJT9 491 aa8.39□□□□□ -1.07
VPS50-212ENST00000476413 NPHP3-ACAD11A0A0J9YXS1 232 aa8.38□□□□□ -1.07
VPS50-212ENST00000476413 SSU72P8A0A1W2PR75 194 aa8.38□□□□□ -1.07
VPS50-212ENST00000476413 EYA4O95677 639 aa8.38□□□□□ -1.07
VPS50-212ENST00000476413 GUCY1A3Q02108 690 aa8.38□□□□□ -1.07
VPS50-212ENST00000476413 HRASLS5Q96KN8 279 aa8.38□□□□□ -1.07
VPS50-212ENST00000476413 G6PC3Q9BUM1 346 aa8.38□□□□□ -1.07
VPS50-212ENST00000476413 CDIP1Q9H305 208 aa8.38□□□□□ -1.07
VPS50-212ENST00000476413 EBF1Q9UH73 591 aa8.38□□□□□ -1.07
VPS50-212ENST00000476413 MSTNO14793 375 aa8.37□□□□□ -1.07
VPS50-212ENST00000476413 JMJD7P0C870 316 aa8.37□□□□□ -1.07
VPS50-212ENST00000476413 CDK11BP21127 795 aaKnown RBP8.37□□□□□ -1.07
VPS50-212ENST00000476413 NFKB2Q00653 900 aa8.37□□□□□ -1.07
VPS50-212ENST00000476413 PRKCQQ04759 706 aa8.37□□□□□ -1.07
VPS50-212ENST00000476413 AOC3Q16853 763 aa8.37□□□□□ -1.07
VPS50-212ENST00000476413 IQCEQ6IPM2 695 aa8.37□□□□□ -1.07
VPS50-212ENST00000476413 ZCCHC8Q6NZY4 707 aaKnown RBP8.37□□□□□ -1.07
VPS50-212ENST00000476413 CPNE8Q86YQ8 564 aa8.37□□□□□ -1.07
VPS50-212ENST00000476413 VAV3Q9UKW4 847 aa8.37□□□□□ -1.07
VPS50-212ENST00000476413 KPNA6O60684 536 aa8.36□□□□□ -1.07
VPS50-212ENST00000476413 NPTXRO95502 500 aa8.36□□□□□ -1.07
VPS50-212ENST00000476413 CKMP06732 381 aa8.36□□□□□ -1.07
VPS50-212ENST00000476413 ENDOUP21128 410 aaKnown RBP8.36□□□□□ -1.07
VPS50-212ENST00000476413 CD96P40200 585 aa8.36□□□□□ -1.07
VPS50-212ENST00000476413 EVA1CP58658 441 aa8.36□□□□□ -1.07
VPS50-212ENST00000476413 CDCA2Q69YH5 1023 aaPredicted RBP8.36□□□□□ -1.07
VPS50-212ENST00000476413 WAPLQ7Z5K2 1190 aa8.36□□□□□ -1.07
VPS50-212ENST00000476413 MTDHQ86UE4 582 aaKnown RBP8.36□□□□□ -1.07
VPS50-212ENST00000476413 AHI1Q8N157 1196 aa8.36□□□□□ -1.07
VPS50-212ENST00000476413 PCDH19Q8TAB3 1148 aa8.36□□□□□ -1.07
VPS50-212ENST00000476413 LEO1Q8WVC0 666 aaPredicted RBP8.36□□□□□ -1.07
VPS50-212ENST00000476413 ASB11Q8WXH4 323 aa8.36□□□□□ -1.07
VPS50-212ENST00000476413 FCRL2Q96LA5 508 aaPredicted RBP8.36□□□□□ -1.07
VPS50-212ENST00000476413 ORAI3Q9BRQ5 295 aa8.36□□□□□ -1.07
VPS50-212ENST00000476413 TRBV23OR9-2A0A075B6M9 112 aa8.35□□□□□ -1.07
VPS50-212ENST00000476413 C7orf72A4D263 438 aa8.35□□□□□ -1.07
VPS50-212ENST00000476413 WNT9AO14904 365 aa8.35□□□□□ -1.07
VPS50-212ENST00000476413 RPL10P27635 214 aaKnown RBP8.35□□□□□ -1.07
VPS50-212ENST00000476413 CT47A1Q5JQC4 288 aaPredicted RBP8.35□□□□□ -1.07
VPS50-212ENST00000476413 PRSS36Q5K4E3 855 aa8.35□□□□□ -1.07
VPS50-212ENST00000476413 CYP2R1Q6VVX0 501 aa8.35□□□□□ -1.07
VPS50-212ENST00000476413 DPF3Q92784 378 aa8.35□□□□□ -1.07
VPS50-212ENST00000476413 TYW1Q9NV66 732 aaKnown RBP8.35□□□□□ -1.07
VPS50-212ENST00000476413 PPARGC1AQ9UBK2 798 aaKnown RBP8.35□□□□□ -1.07
VPS50-212ENST00000476413 B4E1Z4 1266 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 GLRX3O76003 335 aaKnown RBP8.34□□□□□ -1.07
VPS50-212ENST00000476413 NAT1P18440 290 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 NEK4P51957 841 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 BNIP3Q12983 259 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 LAPTM5Q13571 262 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 DHCR24Q15392 516 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 PLEKHG6Q3KR16 790 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 CFAP100Q494V2 611 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 PIK3R6Q5UE93 754 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 LINC01599Q8WXQ3 324 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 SAMD15Q9P1V8 674 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 PCDHA2Q9Y5H9 948 aa8.34□□□□□ -1.07
VPS50-212ENST00000476413 TBC1D8O95759 1140 aa8.33□□□□□ -1.08
VPS50-212ENST00000476413 PDGFRBP09619 1106 aa8.33□□□□□ -1.08
VPS50-212ENST00000476413 PAK1Q13153 545 aa8.33□□□□□ -1.08
VPS50-212ENST00000476413 KIZQ2M2Z5 673 aa8.33□□□□□ -1.08
VPS50-212ENST00000476413 SKOR2Q2VWA4 1001 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms