RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 TPCN1Q9ULQ1 816 aa32.36■■■□□ 2.77
SMARCC1-203ENST00000454240 ASTN1O14525 1302 aa32.35■■■□□ 2.77
SMARCC1-203ENST00000454240 PURBQ96QR8 312 aaKnown RBP32.35■■■□□ 2.77
SMARCC1-203ENST00000454240 RNF208Q9H0X6 261 aa32.35■■■□□ 2.77
SMARCC1-203ENST00000454240 NCOA5Q9HCD5 579 aaKnown RBP32.35■■■□□ 2.77
SMARCC1-203ENST00000454240 V9GY48 417 aaPredicted RBP32.35■■■□□ 2.77
SMARCC1-203ENST00000454240 SYNGAP1Q96PV0 1343 aa32.34■■■□□ 2.77
SMARCC1-203ENST00000454240 CALML3P27482 149 aa32.34■■■□□ 2.77
SMARCC1-203ENST00000454240 SAMD3Q8N6K7 520 aa32.34■■■□□ 2.77
SMARCC1-203ENST00000454240 TBC1D32Q96NH3 1257 aa32.34■■■□□ 2.77
SMARCC1-203ENST00000454240 TMEM106CQ9BVX2 250 aa32.34■■■□□ 2.77
SMARCC1-203ENST00000454240 PAK6Q9NQU5 681 aaPredicted RBP32.34■■■□□ 2.77
SMARCC1-203ENST00000454240 KIAA0100Q14667 2235 aaKnown RBP32.33■■■□□ 2.77
SMARCC1-203ENST00000454240 XRN2Q9H0D6 950 aaKnown RBP eCLIP32.33■■■□□ 2.77
SMARCC1-203ENST00000454240 MAP3K20Q9NYL2 800 aaKnown RBP32.33■■■□□ 2.77
SMARCC1-203ENST00000454240 SNAI1O95863 264 aaPredicted RBP32.32■■■□□ 2.76
SMARCC1-203ENST00000454240 CYBAP13498 195 aa32.32■■■□□ 2.76
SMARCC1-203ENST00000454240 IFNAR1P17181 557 aa32.32■■■□□ 2.76
SMARCC1-203ENST00000454240 CCND3P30281 292 aaPredicted RBP32.32■■■□□ 2.76
SMARCC1-203ENST00000454240 HSD17B4P51659 736 aa32.32■■■□□ 2.76
SMARCC1-203ENST00000454240 STK3Q13188 491 aa32.32■■■□□ 2.76
SMARCC1-203ENST00000454240 TRPV1Q8NER1 839 aa32.32■■■□□ 2.76
SMARCC1-203ENST00000454240 ADD3Q9UEY8 706 aaKnown RBP32.32■■■□□ 2.76
SMARCC1-203ENST00000454240 NRBP1Q9UHY1 535 aa32.32■■■□□ 2.76
SMARCC1-203ENST00000454240 CFBP00751 764 aa32.31■■■□□ 2.76
SMARCC1-203ENST00000454240 GJB1P08034 283 aa32.31■■■□□ 2.76
SMARCC1-203ENST00000454240 SYTL5Q8TDW5 730 aaPredicted RBP32.31■■■□□ 2.76
SMARCC1-203ENST00000454240 LOC102724159A0A0B4J2E5 919 aa32.3■■■□□ 2.76
SMARCC1-203ENST00000454240 POTEFA5A3E0 1075 aa32.3■■■□□ 2.76
SMARCC1-203ENST00000454240 ASB14A6NK59 587 aa32.3■■■□□ 2.76
SMARCC1-203ENST00000454240 PRPF3O43395 683 aaKnown RBP32.3■■■□□ 2.76
SMARCC1-203ENST00000454240 PFKFB2O60825 505 aa32.3■■■□□ 2.76
SMARCC1-203ENST00000454240 PWP2Q15269 919 aaKnown RBP32.3■■■□□ 2.76
SMARCC1-203ENST00000454240 PRAMEF19Q5SWL8 479 aa32.3■■■□□ 2.76
SMARCC1-203ENST00000454240 DNERQ8NFT8 737 aa32.3■■■□□ 2.76
SMARCC1-203ENST00000454240 SLKQ9H2G2 1235 aaPredicted RBP32.3■■■□□ 2.76
SMARCC1-203ENST00000454240 COL20A1Q9P218 1284 aa32.3■■■□□ 2.76
SMARCC1-203ENST00000454240 ALDH5A1P51649 535 aaPredicted RBP32.29■■■□□ 2.76
SMARCC1-203ENST00000454240 SCRN1Q12765 414 aa32.29■■■□□ 2.76
SMARCC1-203ENST00000454240 ARMCX2Q7L311 632 aa32.29■■■□□ 2.76
SMARCC1-203ENST00000454240 MORC4Q8TE76 937 aa32.29■■■□□ 2.76
SMARCC1-203ENST00000454240 CDKN2AIPQ9NXV6 580 aaPredicted RBP32.29■■■□□ 2.76
SMARCC1-203ENST00000454240 SOX10P56693 466 aa32.28■■■□□ 2.76
SMARCC1-203ENST00000454240 RABEP1Q15276 862 aa32.28■■■□□ 2.76
SMARCC1-203ENST00000454240 WWC2Q6AWC2 1192 aa32.28■■■□□ 2.76
SMARCC1-203ENST00000454240 HEATR3Q7Z4Q2 680 aa32.28■■■□□ 2.76
SMARCC1-203ENST00000454240 GPKOWQ92917 476 aaPredicted RBP eCLIP32.28■■■□□ 2.76
SMARCC1-203ENST00000454240 PHKBQ93100 1093 aa32.28■■■□□ 2.76
SMARCC1-203ENST00000454240 RNF26Q9BY78 433 aaPredicted RBP32.28■■■□□ 2.76
SMARCC1-203ENST00000454240 RBM27Q9P2N5 1060 aaKnown RBP32.28■■■□□ 2.76
SMARCC1-203ENST00000454240 GJA8P48165 433 aa32.27■■■□□ 2.76
SMARCC1-203ENST00000454240 ME3Q16798 604 aa32.27■■■□□ 2.76
SMARCC1-203ENST00000454240 PFKFB3Q16875 520 aaPredicted RBP32.27■■■□□ 2.76
SMARCC1-203ENST00000454240 DEFB118Q96PH6 123 aa32.27■■■□□ 2.76
SMARCC1-203ENST00000454240 TAAR1Q96RJ0 339 aa32.27■■■□□ 2.76
SMARCC1-203ENST00000454240 CNPY2Q9Y2B0 182 aa32.27■■■□□ 2.76
SMARCC1-203ENST00000454240 FRMPD3Q5JV73 1810 aa32.27■■■□□ 2.76
SMARCC1-203ENST00000454240 LRRC37A2A6NM11 1700 aa32.26■■■□□ 2.76
SMARCC1-203ENST00000454240 GCOM1H8Y6P7 765 aaPredicted RBP32.26■■■□□ 2.75
SMARCC1-203ENST00000454240 hCG_1984214I3L0E3 225 aa32.26■■■□□ 2.75
SMARCC1-203ENST00000454240 SGPL1O95470 568 aa32.26■■■□□ 2.75
SMARCC1-203ENST00000454240 POLR2MP0CAP2 368 aa32.26■■■□□ 2.75
SMARCC1-203ENST00000454240 ZNF865P0CJ78 1059 aaPredicted RBP32.26■■■□□ 2.75
SMARCC1-203ENST00000454240 PKN1Q16512 942 aa32.26■■■□□ 2.75
SMARCC1-203ENST00000454240 NOL8Q76FK4 1167 aaKnown RBP32.26■■■□□ 2.75
SMARCC1-203ENST00000454240 ZNF713Q8N859 430 aaPredicted RBP32.26■■■□□ 2.75
SMARCC1-203ENST00000454240 KATNBL1Q9H079 304 aa32.26■■■□□ 2.75
SMARCC1-203ENST00000454240 ABHD16BQ9H3Z7 469 aa32.26■■■□□ 2.75
SMARCC1-203ENST00000454240 CPLX1O14810 134 aa32.25■■■□□ 2.75
SMARCC1-203ENST00000454240 LARGE1O95461 756 aa32.25■■■□□ 2.75
SMARCC1-203ENST00000454240 HOXA13P31271 388 aaPredicted RBP32.25■■■□□ 2.75
SMARCC1-203ENST00000454240 TYW1BQ6NUM6 668 aa32.25■■■□□ 2.75
SMARCC1-203ENST00000454240 IL27Q8NEV9 243 aa32.25■■■□□ 2.75
SMARCC1-203ENST00000454240 U2AF1L4Q8WU68 220 aaKnown RBP32.25■■■□□ 2.75
SMARCC1-203ENST00000454240 SLC26A6Q9BXS9 759 aa32.25■■■□□ 2.75
SMARCC1-203ENST00000454240 BARHL2Q9NY43 387 aa32.25■■■□□ 2.75
SMARCC1-203ENST00000454240 DDX49Q9Y6V7 483 aaKnown RBP32.25■■■□□ 2.75
SMARCC1-203ENST00000454240 STXBP3O00186 592 aa32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 PIK3CDO00329 1044 aa32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 SEPT4O43236 478 aa32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 CAPN15O75808 1086 aa32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 SCG2P13521 617 aa32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 EDNRBP24530 442 aa32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 CNGA1P29973 690 aa32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 ACVR2BQ13705 512 aa32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 LHX8Q68G74 356 aa32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 CPLX2Q6PUV4 134 aaKnown RBP32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 CRISPLD2Q9H0B8 497 aa32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 LIMCH1Q9UPQ0 1083 aa32.24■■■□□ 2.75
SMARCC1-203ENST00000454240 PPFIA3O75145 1194 aa32.23■■■□□ 2.75
SMARCC1-203ENST00000454240 EN2P19622 333 aaPredicted RBP32.23■■■□□ 2.75
SMARCC1-203ENST00000454240 AKAP17AQ02040 695 aaKnown RBP32.23■■■□□ 2.75
SMARCC1-203ENST00000454240 PPP1R18Q6NYC8 613 aa32.23■■■□□ 2.75
SMARCC1-203ENST00000454240 NSUN6Q8TEA1 469 aaKnown RBP32.23■■■□□ 2.75
SMARCC1-203ENST00000454240 RMDN3Q96TC7 470 aa32.23■■■□□ 2.75
SMARCC1-203ENST00000454240 PSTPIP2Q9H939 334 aa32.23■■■□□ 2.75
SMARCC1-203ENST00000454240 DDX20Q9UHI6 824 aaKnown RBP32.23■■■□□ 2.75
SMARCC1-203ENST00000454240 MEIS2O14770 477 aa32.22■■■□□ 2.75
SMARCC1-203ENST00000454240 SSRP1Q08945 709 aaKnown RBP32.22■■■□□ 2.75
SMARCC1-203ENST00000454240 GTF3C6Q969F1 213 aa32.22■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 155.8 ms