RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 NISCHQ9Y2I1 1504 aa67.58■■■■■ 8.41
SMARCC1-203ENST00000454240 CCDC180Q9P1Z9 1646 aa59.97■■■■■ 7.19
SMARCC1-203ENST00000454240 ABCC9O60706 1549 aa58.32■■■■■ 6.93
SMARCC1-203ENST00000454240 ZCCHC6Q5VYS8 1495 aaKnown RBP56.34■■■■■ 6.61
SMARCC1-203ENST00000454240 NACADO15069 1562 aa56.29■■■■■ 6.6
SMARCC1-203ENST00000454240 RB1CC1Q8TDY2 1594 aa56.27■■■■■ 6.6
SMARCC1-203ENST00000454240 DCAF8L2P0C7V8 631 aa56.26■■■■■ 6.6
SMARCC1-203ENST00000454240 MYO15BQ96JP2 1530 aa56.07■■■■■ 6.57
SMARCC1-203ENST00000454240 DCAF1Q9Y4B6 1507 aa55.95■■■■■ 6.55
SMARCC1-203ENST00000454240 UNC13AQ9UPW8 1703 aa55.09■■■■■ 6.41
SMARCC1-203ENST00000454240 SCRIBQ14160 1630 aa54.7■■■■■ 6.35
SMARCC1-203ENST00000454240 BICRAQ9NZM4 1560 aa54.59■■■■■ 6.33
SMARCC1-203ENST00000454240 PABPN1Q86U42 306 aaKnown RBP eCLIP54.55■■■■■ 6.32
SMARCC1-203ENST00000454240 SHROOM4Q9ULL8 1493 aa54.01■■■■■ 6.24
SMARCC1-203ENST00000454240 DNAJC5BQ9UF47 199 aa53.3■■■■■ 6.12
SMARCC1-203ENST00000454240 EIF4G1Q04637 1599 aaKnown RBP53.1■■■■■ 6.09
SMARCC1-203ENST00000454240 CC2D2AQ9P2K1 1620 aa52.82■■■■■ 6.05
SMARCC1-203ENST00000454240 CECR2Q9BXF3 1484 aa52.61■■■■■ 6.01
SMARCC1-203ENST00000454240 SMARCA4P51532 1647 aa52.37■■■■■ 5.97
SMARCC1-203ENST00000454240 BAZ1AQ9NRL2 1556 aaPredicted RBP52.34■■■■■ 5.97
SMARCC1-203ENST00000454240 MROH2BQ7Z745 1585 aa52.08■■■■■ 5.93
SMARCC1-203ENST00000454240 ATAD2BQ9ULI0 1458 aa52■■■■■ 5.92
SMARCC1-203ENST00000454240 SMARCA2P51531 1590 aa51.95■■■■■ 5.91
SMARCC1-203ENST00000454240 NCAPD3P42695 1498 aa51.94■■■■■ 5.91
SMARCC1-203ENST00000454240 PEG3Q9GZU2 1588 aa51.88■■■■■ 5.9
SMARCC1-203ENST00000454240 HMGXB3Q12766 1538 aa51.7■■■■■ 5.87
SMARCC1-203ENST00000454240 RSF1Q96T23 1441 aaPredicted RBP51.59■■■■■ 5.85
SMARCC1-203ENST00000454240 WIZO95785 1651 aa51.56■■■■■ 5.84
SMARCC1-203ENST00000454240 BAZ1BQ9UIG0 1483 aaKnown RBP51.56■■■■■ 5.84
SMARCC1-203ENST00000454240 TOP2AP11388 1531 aaKnown RBP51■■■■■ 5.75
SMARCC1-203ENST00000454240 NESP48681 1621 aa50.58■■■■■ 5.69
SMARCC1-203ENST00000454240 LAMC3Q9Y6N6 1575 aa50.52■■■■■ 5.68
SMARCC1-203ENST00000454240 SUPT5HO00267 1087 aaKnown RBP50.45■■■■■ 5.67
SMARCC1-203ENST00000454240 CADPSQ9ULU8 1353 aa50.43■■■■■ 5.66
SMARCC1-203ENST00000454240 CCDC88BA6NC98 1476 aa50.4■■■■■ 5.66
SMARCC1-203ENST00000454240 ERCC6Q03468 1493 aa50.22■■■■■ 5.63
SMARCC1-203ENST00000454240 CFTRP13569 1480 aa50.2■■■■■ 5.63
SMARCC1-203ENST00000454240 PDS5BQ9NTI5 1447 aa50.14■■■■■ 5.62
SMARCC1-203ENST00000454240 KIF21AQ7Z4S6 1674 aa50.03■■■■■ 5.6
SMARCC1-203ENST00000454240 PRDM2Q13029 1718 aa49.91■■■■■ 5.58
SMARCC1-203ENST00000454240 FANCD2Q9BXW9 1451 aa49.83■■■■■ 5.57
SMARCC1-203ENST00000454240 THOC2Q8NI27 1593 aaKnown RBP49.77■■■■■ 5.56
SMARCC1-203ENST00000454240 CEP164Q9UPV0 1460 aa49.74■■■■■ 5.55
SMARCC1-203ENST00000454240 CUX2O14529 1486 aa49.63■■■■■ 5.53
SMARCC1-203ENST00000454240 MRC2Q9UBG0 1479 aa49.61■■■■■ 5.53
SMARCC1-203ENST00000454240 WDR62O43379 1518 aa49.45■■■■■ 5.51
SMARCC1-203ENST00000454240 URB2Q14146 1524 aaKnown RBP49.34■■■■■ 5.49
SMARCC1-203ENST00000454240 ABCC8Q09428 1581 aa49.11■■■■■ 5.45
SMARCC1-203ENST00000454240 TOPBP1Q92547 1522 aa49.09■■■■■ 5.45
SMARCC1-203ENST00000454240 DNMBPQ6XZF7 1577 aa49.06■■■■■ 5.44
SMARCC1-203ENST00000454240 CUX1P39880 1505 aa48.83■■■■■ 5.41
SMARCC1-203ENST00000454240 IFT140Q96RY7 1462 aa48.69■■■■■ 5.39
SMARCC1-203ENST00000454240 POLA1P09884 1462 aaPredicted RBP48.68■■■■■ 5.38
SMARCC1-203ENST00000454240 WRNQ14191 1432 aaPredicted RBP eCLIP48.61■■■■■ 5.37
SMARCC1-203ENST00000454240 FGD5Q6ZNL6 1462 aa48.61■■■■■ 5.37
SMARCC1-203ENST00000454240 TARBP1Q13395 1621 aaKnown RBP48.57■■■■■ 5.37
SMARCC1-203ENST00000454240 BIVM-ERCC5R4GMW8 1640 aa48.52■■■■■ 5.36
SMARCC1-203ENST00000454240 TOP2BQ02880 1626 aa48.51■■■■■ 5.36
SMARCC1-203ENST00000454240 SYNJ1O43426 1573 aa48.51■■■■■ 5.36
SMARCC1-203ENST00000454240 SOGA1O94964 1423 aa48.49■■■■■ 5.35
SMARCC1-203ENST00000454240 RAD54L2Q9Y4B4 1467 aa48.47■■■■■ 5.35
SMARCC1-203ENST00000454240 ZNF608Q9ULD9 1512 aaPredicted RBP48.45■■■■■ 5.35
SMARCC1-203ENST00000454240 EIF4G3O43432 1585 aaKnown RBP48.28■■■■■ 5.32
SMARCC1-203ENST00000454240 WDR97A6NE52 1622 aa48.25■■■■■ 5.31
SMARCC1-203ENST00000454240 AQRO60306 1485 aaKnown RBP eCLIP48.22■■■■■ 5.31
SMARCC1-203ENST00000454240 ABCA10Q8WWZ4 1543 aa48.17■■■■■ 5.3
SMARCC1-203ENST00000454240 TDRD9Q8NDG6 1382 aaKnown RBP48.16■■■■■ 5.3
SMARCC1-203ENST00000454240 ABCA5Q8WWZ7 1642 aa47.96■■■■■ 5.27
SMARCC1-203ENST00000454240 GAPVD1Q14C86 1478 aa47.93■■■■■ 5.26
SMARCC1-203ENST00000454240 GRIN2BQ13224 1484 aa47.88■■■■■ 5.26
SMARCC1-203ENST00000454240 PBRM1Q86U86 1689 aa47.86■■■■■ 5.25
SMARCC1-203ENST00000454240 SNAPC4Q5SXM2 1469 aa47.77■■■■■ 5.24
SMARCC1-203ENST00000454240 DNAJC5Q9H3Z4 198 aa47.76■■■■■ 5.24
SMARCC1-203ENST00000454240 MAGI1Q96QZ7 1491 aaPredicted RBP47.72■■■■■ 5.23
SMARCC1-203ENST00000454240 CHD1O14646 1710 aa47.65■■■■■ 5.22
SMARCC1-203ENST00000454240 TRIM41Q8WV44 630 aa47.65■■■■■ 5.22
SMARCC1-203ENST00000454240 OSCARQ8IYS5 282 aa47.62■■■■■ 5.21
SMARCC1-203ENST00000454240 ERICH3Q5RHP9 1530 aa47.61■■■■■ 5.21
SMARCC1-203ENST00000454240 KIF27Q86VH2 1401 aa47.56■■■■■ 5.2
SMARCC1-203ENST00000454240 SYNJ2O15056 1496 aa47.54■■■■■ 5.2
SMARCC1-203ENST00000454240 FBLN2P98095 1184 aa47.53■■■■■ 5.2
SMARCC1-203ENST00000454240 CHMP7Q8WUX9 453 aaPredicted RBP47.47■■■■■ 5.19
SMARCC1-203ENST00000454240 ADAMTS12P58397 1594 aa47.46■■■■■ 5.19
SMARCC1-203ENST00000454240 FHAD1B1AJZ9 1412 aa47.39■■■■■ 5.18
SMARCC1-203ENST00000454240 IGF1RP08069 1367 aa47.37■■■■■ 5.17
SMARCC1-203ENST00000454240 CHIC1Q5VXU3 224 aa47.31■■■■■ 5.16
SMARCC1-203ENST00000454240 RUSC2Q8N2Y8 1516 aa47.27■■■■■ 5.16
SMARCC1-203ENST00000454240 GRIN2AQ12879 1464 aa47.27■■■■■ 5.16
SMARCC1-203ENST00000454240 CUL7Q14999 1698 aa47.24■■■■■ 5.15
SMARCC1-203ENST00000454240 CLASP1Q7Z460 1538 aa47.12■■■■■ 5.13
SMARCC1-203ENST00000454240 CARMIL1Q5VZK9 1371 aa47.08■■■■■ 5.13
SMARCC1-203ENST00000454240 NUP160Q12769 1436 aa47.06■■■■■ 5.12
SMARCC1-203ENST00000454240 CEP170Q5SW79 1584 aa47.04■■■■■ 5.12
SMARCC1-203ENST00000454240 EEA1Q15075 1411 aa46.87■■■■■ 5.09
SMARCC1-203ENST00000454240 ARHGEF11O15085 1522 aa46.85■■■■■ 5.09
SMARCC1-203ENST00000454240 RIMBP3CA6NJZ7 1639 aa46.85■■■■■ 5.09
SMARCC1-203ENST00000454240 RIMBP3BA6NNM3 1639 aa46.85■■■■■ 5.09
SMARCC1-203ENST00000454240 RIMBP3Q9UFD9 1639 aa46.85■■■■■ 5.09
SMARCC1-203ENST00000454240 RAPGEF2Q9Y4G8 1499 aa46.83■■■■■ 5.09
SMARCC1-203ENST00000454240 CSRNP3Q8WYN3 585 aa46.77■■■■■ 5.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms