RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MBNL3Q9NUK0 354 aaKnown RBP4.91□□□□□ -1.62
HMGB1-201ENST00000326004 ADAMTS6Q9UKP5 1117 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 WTIPA6NIX2 430 aaPredicted RBP4.9□□□□□ -1.63
HMGB1-201ENST00000326004 AQP7O14520 342 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 KCNQ2O43526 872 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 NRDCO43847 1150 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 NPHS1O60500 1241 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 RFPL3O75679 317 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 HPXP02790 462 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 APPP05067 770 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 RNASE1P07998 156 aaKnown RBP4.9□□□□□ -1.63
HMGB1-201ENST00000326004 C6orf222P0C671 652 aaPredicted RBP4.9□□□□□ -1.63
HMGB1-201ENST00000326004 NAT1P18440 290 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 GTF2A2P52657 109 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 HK2P52789 917 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 GP2P55259 537 aaKnown RBP4.9□□□□□ -1.63
HMGB1-201ENST00000326004 CORO7P57737 925 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 LAPTM5Q13571 262 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 SLC14A2Q15849 920 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 NTRK3Q16288 839 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 ZNF792Q3KQV3 632 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 GALNT18Q6P9A2 607 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 CEP128Q6ZU80 1094 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 SLCO6A1Q86UG4 719 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 JAMLQ86YT9 394 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 SLKQ9H2G2 1235 aaPredicted RBP4.9□□□□□ -1.63
HMGB1-201ENST00000326004 TMX1Q9H3N1 280 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 RC3H2Q9HBD1 1191 aaKnown RBP4.9□□□□□ -1.63
HMGB1-201ENST00000326004 EBF1Q9UH73 591 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 PLAAQ9Y263 795 aa4.9□□□□□ -1.63
HMGB1-201ENST00000326004 LOC100996750A0A140TA64 210 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 MYO1BO43795 1136 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 USP2O75604 605 aaPredicted RBP4.89□□□□□ -1.63
HMGB1-201ENST00000326004 CEBPAP49715 358 aaPredicted RBP4.89□□□□□ -1.63
HMGB1-201ENST00000326004 RTP1P59025 263 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 GPR85P60893 370 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 SNX17Q15036 470 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 HSF5Q4G112 596 aaPredicted RBP4.89□□□□□ -1.63
HMGB1-201ENST00000326004 CPNE8Q86YQ8 564 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 CCDC103Q8IW40 242 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 IFNL3Q8IZI9 196 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 ABI1Q8IZP0 508 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 GSTCDQ8NEC7 633 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 FLAD1Q8NFF5 587 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 NLGN2Q8NFZ4 835 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.89□□□□□ -1.63
HMGB1-201ENST00000326004 JMJD8Q96S16 334 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 PHF20Q9BVI0 1012 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 KRTAP4-6Q9BYQ5 205 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 C19orf73Q9NVV2 129 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 SFMBT1Q9UHJ3 866 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 TMEFF2Q9UIK5 374 aaPredicted RBP4.89□□□□□ -1.63
HMGB1-201ENST00000326004 CTNND2Q9UQB3 1225 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 TAF6LQ9Y6J9 622 aa4.89□□□□□ -1.63
HMGB1-201ENST00000326004 BLACEA4D250 179 aa4.88□□□□□ -1.63
HMGB1-201ENST00000326004 C7orf72A4D263 438 aa4.88□□□□□ -1.63
HMGB1-201ENST00000326004 ARNTLO00327 626 aa4.88□□□□□ -1.63
HMGB1-201ENST00000326004 PPP1R12AO14974 1030 aaPredicted RBP4.88□□□□□ -1.63
HMGB1-201ENST00000326004 AFMP43652 599 aa4.88□□□□□ -1.63
HMGB1-201ENST00000326004 RPL11P62913 178 aaKnown RBP4.88□□□□□ -1.63
HMGB1-201ENST00000326004 INF2Q27J81 1249 aa4.88□□□□□ -1.63
HMGB1-201ENST00000326004 TKFCQ3LXA3 575 aa4.88□□□□□ -1.63
HMGB1-201ENST00000326004 ASIC4Q96FT7 647 aa4.88□□□□□ -1.63
HMGB1-201ENST00000326004 NDOR1Q9UHB4 597 aa4.88□□□□□ -1.63
HMGB1-201ENST00000326004 ACSL6Q9UKU0 697 aa4.88□□□□□ -1.63
HMGB1-201ENST00000326004 CD2APQ9Y5K6 639 aa4.88□□□□□ -1.63
HMGB1-201ENST00000326004 TIMM13Q9Y5L4 95 aaPredicted RBP4.88□□□□□ -1.63
HMGB1-201ENST00000326004 A0A1W2PQ27 194 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 A0A1W2PQ64 194 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 A0A1W2PQC6 194 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 A0A1W2PQD8 194 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 PABPC4Q13310 644 aaKnown RBP eCLIP4.87□□□□□ -1.63
HMGB1-201ENST00000326004 CBX2Q14781 532 aaPredicted RBP4.87□□□□□ -1.63
HMGB1-201ENST00000326004 MBLAC2Q68D91 279 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 KCNT2Q6UVM3 1135 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 CBLL1Q75N03 491 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 ATG4DQ86TL0 474 aaPredicted RBP4.87□□□□□ -1.63
HMGB1-201ENST00000326004 FAM177A1Q8N128 213 aaPredicted RBP4.87□□□□□ -1.63
HMGB1-201ENST00000326004 RCBTB1Q8NDN9 531 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 MYLIPQ8WY64 445 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 NINJ1Q92982 152 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 SLC52A2Q9HAB3 445 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 SP110Q9HB58 689 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 TRIM39Q9HCM9 518 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.87□□□□□ -1.63
HMGB1-201ENST00000326004 ADGRE2Q9UHX3 823 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 PRKAB1Q9Y478 270 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 ASXL2Q76L83 1435 aa4.87□□□□□ -1.63
HMGB1-201ENST00000326004 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.86□□□□□ -1.63
HMGB1-201ENST00000326004 NOTOA8MTQ0 251 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 H7BY64 318 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 RAPGEF3O95398 923 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 LCP1P13796 627 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 ERVFC1P60507 584 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 LSAMPQ13449 338 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 KIZQ2M2Z5 673 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 DALRD3Q5D0E6 543 aaKnown RBP4.86□□□□□ -1.63
HMGB1-201ENST00000326004 LBX2Q6XYB7 198 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 BRAPQ7Z569 592 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 NBPF11Q86T75 865 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms