RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W RIO1Q12196 484 aaKnown RBP4.41□□□□□ -1.7
SSH4YKL124W MCM16Q12262 181 aa4.41□□□□□ -1.7
SSH4YKL124W LDB17Q12342 491 aa4.41□□□□□ -1.7
SSH4YKL124W GTT2Q12390 233 aa4.41□□□□□ -1.7
SSH4YKL124W HSH49Q99181 213 aaPredicted RBP4.41□□□□□ -1.7
SSH4YKL124W TUB1P09733 447 aaKnown RBP4.4□□□□□ -1.71
SSH4YKL124W RPL1AP0CX43 217 aaKnown RBP4.4□□□□□ -1.71
SSH4YKL124W RPL1BP0CX44 217 aaKnown RBP4.4□□□□□ -1.71
SSH4YKL124W INO1P11986 533 aa4.4□□□□□ -1.71
SSH4YKL124W PHO87P25360 923 aa4.4□□□□□ -1.71
SSH4YKL124W GID7P25569 745 aa4.4□□□□□ -1.71
SSH4YKL124W UBC6P33296 250 aaPredicted RBP4.4□□□□□ -1.71
SSH4YKL124W DUT1P33317 147 aa4.4□□□□□ -1.71
SSH4YKL124W NIC96P34077 839 aa4.4□□□□□ -1.71
SSH4YKL124W GMH1P36125 273 aa4.4□□□□□ -1.71
SSH4YKL124W LEU5P38702 357 aa4.4□□□□□ -1.71
SSH4YKL124W SEO1P39709 593 aa4.4□□□□□ -1.71
SSH4YKL124W YAL037WP39728 267 aa4.4□□□□□ -1.71
SSH4YKL124W TPA1P40032 644 aaKnown RBP4.4□□□□□ -1.71
SSH4YKL124W NUP85P46673 744 aa4.4□□□□□ -1.71
SSH4YKL124W CIS3P47001 227 aa4.4□□□□□ -1.71
SSH4YKL124W CCT8P47079 568 aaKnown RBP4.4□□□□□ -1.71
SSH4YKL124W TAH11P47112 604 aa4.4□□□□□ -1.71
SSH4YKL124W MAL11P53048 616 aa4.4□□□□□ -1.71
SSH4YKL124W HST3P53687 447 aa4.4□□□□□ -1.71
SSH4YKL124W ERV25P54837 211 aaKnown RBP4.4□□□□□ -1.71
SSH4YKL124W TRS31Q03337 283 aa4.4□□□□□ -1.71
SSH4YKL124W URH1Q04179 340 aa4.4□□□□□ -1.71
SSH4YKL124W YLR456WQ06199 204 aa4.4□□□□□ -1.71
SSH4YKL124W MLC2Q06580 163 aa4.4□□□□□ -1.71
SSH4YKL124W MET32Q12041 191 aa4.4□□□□□ -1.71
SSH4YKL124W POL2P21951 2222 aaKnown RBP4.4□□□□□ -1.71
SSH4YKL124W GAL4P04386 881 aa4.39□□□□□ -1.71
SSH4YKL124W GCR1P07261 785 aa4.39□□□□□ -1.71
SSH4YKL124W FUR1P18562 216 aaKnown RBP4.39□□□□□ -1.71
SSH4YKL124W YSR3P23501 404 aa4.39□□□□□ -1.71
SSH4YKL124W GBP2P25555 427 aaKnown RBP RIP-Chip data4.39□□□□□ -1.71not detected
SSH4YKL124W GAR1P28007 205 aaKnown RBP4.39□□□□□ -1.71
SSH4YKL124W URA10P30402 227 aa4.39□□□□□ -1.71
SSH4YKL124W KRE6P32486 720 aa4.39□□□□□ -1.71
SSH4YKL124W BEM3P32873 1128 aa4.39□□□□□ -1.71
SSH4YKL124W BYE1P36106 594 aa4.39□□□□□ -1.71
SSH4YKL124W MRPL37P36532 105 aa4.39□□□□□ -1.71
SSH4YKL124W UBS1P38290 277 aa4.39□□□□□ -1.71
SSH4YKL124W PCL5P38794 229 aa4.39□□□□□ -1.71
SSH4YKL124W CCT4P39078 528 aaKnown RBP4.39□□□□□ -1.71
SSH4YKL124W ALG8P40351 577 aa4.39□□□□□ -1.71
SSH4YKL124W GTS1P40956 396 aa4.39□□□□□ -1.71
SSH4YKL124W YJL107CP42947 387 aa4.39□□□□□ -1.71
SSH4YKL124W PET130P47065 347 aa4.39□□□□□ -1.71
SSH4YKL124W YGR053CP53234 283 aa4.39□□□□□ -1.71
SSH4YKL124W MAL13P53338 473 aa4.39□□□□□ -1.71
SSH4YKL124W NRM1P53718 249 aa4.39□□□□□ -1.71
SSH4YKL124W ZRG17P53735 605 aa4.39□□□□□ -1.71
SSH4YKL124W FRE4P53746 719 aa4.39□□□□□ -1.71
SSH4YKL124W GTR1Q00582 310 aa4.39□□□□□ -1.71
SSH4YKL124W SLU7Q02775 382 aaKnown RBP4.39□□□□□ -1.71
SSH4YKL124W NHX1Q04121 633 aa4.39□□□□□ -1.71
SSH4YKL124W SLD7Q08457 257 aa4.39□□□□□ -1.71
SSH4YKL124W TRM8Q12009 286 aa4.39□□□□□ -1.71
SSH4YKL124W YDR061WQ12298 539 aa4.39□□□□□ -1.71
SSH4YKL124W RKM5Q12367 367 aa4.39□□□□□ -1.71
SSH4YKL124W RMD5Q12508 421 aa4.39□□□□□ -1.71
SSH4YKL124W MDM35O60200 86 aa4.38□□□□□ -1.71
SSH4YKL124W PEP5P12868 1029 aa4.38□□□□□ -1.71
SSH4YKL124W ABF1P14164 731 aa4.38□□□□□ -1.71
SSH4YKL124W CDC34P14682 295 aa4.38□□□□□ -1.71
SSH4YKL124W MET8P15807 274 aa4.38□□□□□ -1.71
SSH4YKL124W PPH21P23594 369 aa4.38□□□□□ -1.71
SSH4YKL124W NPP1P25353 742 aa4.38□□□□□ -1.71
SSH4YKL124W YCL068CP25593 260 aa4.38□□□□□ -1.71
SSH4YKL124W MSH1P25846 959 aa4.38□□□□□ -1.71
SSH4YKL124W MGT1P26188 188 aa4.38□□□□□ -1.71
SSH4YKL124W GUT2P32191 649 aa4.38□□□□□ -1.71
SSH4YKL124W ASF2P32448 525 aaPredicted RBP4.38□□□□□ -1.71
SSH4YKL124W PET309P32522 965 aaPredicted RBP4.38□□□□□ -1.71
SSH4YKL124W LTV1P34078 463 aa4.38□□□□□ -1.71
SSH4YKL124W YBP1P38315 674 aa4.38□□□□□ -1.71
SSH4YKL124W NMD5P46970 1048 aa4.38□□□□□ -1.71
SSH4YKL124W RPA14P50106 137 aa4.38□□□□□ -1.71
SSH4YKL124W SHE4P51534 789 aa4.38□□□□□ -1.71
SSH4YKL124W EFM5P53200 248 aaKnown RBP4.38□□□□□ -1.71
SSH4YKL124W EGD1Q02642 157 aaKnown RBP4.38□□□□□ -1.71
SSH4YKL124W UGO1Q03327 502 aa4.38□□□□□ -1.71
SSH4YKL124W EMI1Q04406 187 aa4.38□□□□□ -1.71
SSH4YKL124W VTA1Q06263 330 aa4.38□□□□□ -1.71
SSH4YKL124W PUN1Q06991 263 aa4.38□□□□□ -1.71
SSH4YKL124W HRK1Q08732 759 aaKnown RBP4.38□□□□□ -1.71
SSH4YKL124W YOR012WQ12351 137 aa4.38□□□□□ -1.71
SSH4YKL124W BRR2P32639 2163 aaKnown RBP4.38□□□□□ -1.71
SSH4YKL124W PRP9P19736 530 aaKnown RBP4.38□□□□□ -1.71
SSH4YKL124W VAN1P23642 535 aa4.38□□□□□ -1.71
SSH4YKL124W CDC20P26309 610 aa4.38□□□□□ -1.71
SSH4YKL124W URA7P28274 579 aaKnown RBP4.38□□□□□ -1.71
SSH4YKL124W TPS2P31688 896 aaKnown RBP4.38□□□□□ -1.71
SSH4YKL124W MF(ALPHA)2P32435 120 aa4.38□□□□□ -1.71
SSH4YKL124W PDR3P33200 976 aa4.38□□□□□ -1.71
SSH4YKL124W PRP18P33411 251 aaPredicted RBP4.38□□□□□ -1.71
SSH4YKL124W YBR184WP38299 523 aa4.38□□□□□ -1.71
SSH4YKL124W FTH1P38310 465 aa4.38□□□□□ -1.71
Retrieved 100 of 5,963 RNA–protein pairs in 26.2 ms