RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 CCDC178Q5BJE1 867 aa16.05■□□□□ 0.16
TRIM28-211ENST00000597968 C9orf50Q5SZB4 431 aa16.05■□□□□ 0.16
TRIM28-211ENST00000597968 VPS53Q5VIR6 699 aa16.05■□□□□ 0.16
TRIM28-211ENST00000597968 MFSD5Q6N075 450 aa16.05■□□□□ 0.16
TRIM28-211ENST00000597968 LENG1Q96BZ8 264 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-211ENST00000597968 VTA1Q9NP79 307 aa16.05■□□□□ 0.16
TRIM28-211ENST00000597968 CYP39A1Q9NYL5 469 aa16.05■□□□□ 0.16
TRIM28-211ENST00000597968 CCPG1Q9ULG6 757 aa16.05■□□□□ 0.16
TRIM28-211ENST00000597968 GNEQ9Y223 722 aaKnown RBP16.05■□□□□ 0.16
TRIM28-211ENST00000597968 UNC80Q8N2C7 3258 aa16.04■□□□□ 0.16
TRIM28-211ENST00000597968 CCDC171Q6TFL3 1326 aa16.04■□□□□ 0.16
TRIM28-211ENST00000597968 SOWAHBA6NEL2 793 aa16.04■□□□□ 0.16
TRIM28-211ENST00000597968 DLL1O00548 723 aa16.04■□□□□ 0.16
TRIM28-211ENST00000597968 ITGB8P26012 769 aa16.04■□□□□ 0.16
TRIM28-211ENST00000597968 CNTN2Q02246 1040 aa16.04■□□□□ 0.16
TRIM28-211ENST00000597968 PPIGQ13427 754 aaKnown RBP eCLIP16.04■□□□□ 0.16
TRIM28-211ENST00000597968 MFSD6Q6ZSS7 791 aa16.04■□□□□ 0.16
TRIM28-211ENST00000597968 SLC43A3Q8NBI5 491 aa16.04■□□□□ 0.16
TRIM28-211ENST00000597968 RNPC3Q96LT9 517 aaKnown RBP16.04■□□□□ 0.16
TRIM28-211ENST00000597968 GUCD1Q96NT3 240 aa16.04■□□□□ 0.16
TRIM28-211ENST00000597968 MPHOSPH6Q99547 160 aaKnown RBP16.04■□□□□ 0.16
TRIM28-211ENST00000597968 A0A0D9SFI3 127 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-211ENST00000597968 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-211ENST00000597968 HIP1O00291 1037 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 ADCY6O43306 1168 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 NMT2O60551 498 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 SNHG28P0DPA3 235 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 CCDC96Q2M329 555 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 AKNAD1Q5T1N1 836 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 SYDE2Q5VT97 1194 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 TMEM199Q8N511 208 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 FAM227BQ96M60 508 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 TMEM47Q9BQJ4 181 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 AP5M1Q9H0R1 490 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 SEMA6BQ9H3T3 888 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 TOMM22Q9NS69 142 aa16.03■□□□□ 0.16
TRIM28-211ENST00000597968 WDR19Q8NEZ3 1342 aa16.02■□□□□ 0.16
TRIM28-211ENST00000597968 MYADML2A6NDP7 307 aa16.02■□□□□ 0.16
TRIM28-211ENST00000597968 TRIM6-TRIM34B2RNG4 842 aa16.02■□□□□ 0.16
TRIM28-211ENST00000597968 B4DLN1 442 aa16.02■□□□□ 0.16
TRIM28-211ENST00000597968 CTAGE5O15320 804 aa16.02■□□□□ 0.16
TRIM28-211ENST00000597968 PDHBP11177 359 aa16.02■□□□□ 0.16
TRIM28-211ENST00000597968 MRPL12P52815 198 aaKnown RBP16.02■□□□□ 0.16
TRIM28-211ENST00000597968 FSCN1Q16658 493 aaKnown RBP16.02■□□□□ 0.16
TRIM28-211ENST00000597968 GPATCH4Q5T3I0 446 aaKnown RBP16.02■□□□□ 0.16
TRIM28-211ENST00000597968 TLK2Q86UE8 772 aa16.02■□□□□ 0.16
TRIM28-211ENST00000597968 DGKHQ86XP1 1220 aa16.02■□□□□ 0.16
TRIM28-211ENST00000597968 FAM126BQ8IXS8 530 aa16.02■□□□□ 0.16
TRIM28-211ENST00000597968 ESR2Q92731 530 aa16.02■□□□□ 0.16
TRIM28-211ENST00000597968 VTI1AQ96AJ9 217 aa16.02■□□□□ 0.16
TRIM28-211ENST00000597968 CDH23Q9H251 3354 aa16.01■□□□□ 0.15
TRIM28-211ENST00000597968 CD4P01730 458 aa16.01■□□□□ 0.15
TRIM28-211ENST00000597968 NMIQ13287 307 aaPredicted RBP16.01■□□□□ 0.15
TRIM28-211ENST00000597968 MUM1L1Q5H9M0 696 aa16.01■□□□□ 0.15
TRIM28-211ENST00000597968 TAPT1Q6NXT6 567 aa16.01■□□□□ 0.15
TRIM28-211ENST00000597968 PSRC1Q6PGN9 363 aaPredicted RBP16.01■□□□□ 0.15
TRIM28-211ENST00000597968 NOL8Q76FK4 1167 aaKnown RBP16.01■□□□□ 0.15
TRIM28-211ENST00000597968 CHD1LQ86WJ1 897 aa16.01■□□□□ 0.15
TRIM28-211ENST00000597968 RGS22Q8NE09 1264 aa16.01■□□□□ 0.15
TRIM28-211ENST00000597968 DNERQ8NFT8 737 aa16.01■□□□□ 0.15
TRIM28-211ENST00000597968 INCENPQ9NQS7 918 aa16.01■□□□□ 0.15
TRIM28-211ENST00000597968 ZNF213O14771 459 aa16■□□□□ 0.15
TRIM28-211ENST00000597968 NKRFO15226 690 aaKnown RBP eCLIP16■□□□□ 0.154e-8■□□□□ 11.1
TRIM28-211ENST00000597968 SDSP20132 328 aa16■□□□□ 0.15
TRIM28-211ENST00000597968 ZNF543Q08ER8 600 aa16■□□□□ 0.15
TRIM28-211ENST00000597968 DUSP28Q4G0W2 176 aa16■□□□□ 0.15
TRIM28-211ENST00000597968 RRP12Q5JTH9 1297 aaKnown RBP16■□□□□ 0.15
TRIM28-211ENST00000597968 NSMFQ6X4W1 530 aa16■□□□□ 0.15
TRIM28-211ENST00000597968 ZNF589Q86UQ0 364 aaPredicted RBP16■□□□□ 0.15
TRIM28-211ENST00000597968 IQCA1Q86XH1 822 aa16■□□□□ 0.15
TRIM28-211ENST00000597968 CDX2Q99626 313 aaPredicted RBP16■□□□□ 0.15
TRIM28-211ENST00000597968 LNPKQ9C0E8 428 aa16■□□□□ 0.15
TRIM28-211ENST00000597968 ASTN1O14525 1302 aa15.99■□□□□ 0.15
TRIM28-211ENST00000597968 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.99■□□□□ 0.15
TRIM28-211ENST00000597968 RBM47A0AV96 593 aaKnown RBP15.99■□□□□ 0.15
TRIM28-211ENST00000597968 SMPD1P17405 629 aa15.99■□□□□ 0.15
TRIM28-211ENST00000597968 CPT1AP50416 773 aa15.99■□□□□ 0.15
TRIM28-211ENST00000597968 ALDH5A1P51649 535 aaPredicted RBP15.99■□□□□ 0.15
TRIM28-211ENST00000597968 EPHB4P54760 987 aa15.99■□□□□ 0.15
TRIM28-211ENST00000597968 NUCB1Q02818 461 aa15.99■□□□□ 0.15
TRIM28-211ENST00000597968 ITGA7Q13683 1181 aa15.99■□□□□ 0.15
TRIM28-211ENST00000597968 BAATQ14032 418 aaPredicted RBP15.99■□□□□ 0.15
TRIM28-211ENST00000597968 RASIP1Q5U651 963 aa15.99■□□□□ 0.15
TRIM28-211ENST00000597968 RILPL2Q969X0 211 aa15.99■□□□□ 0.15
TRIM28-211ENST00000597968 MTIF3Q9H2K0 278 aaKnown RBP15.99■□□□□ 0.15
TRIM28-211ENST00000597968 POLR3EQ9NVU0 708 aa15.99■□□□□ 0.15
TRIM28-211ENST00000597968 EYSQ5T1H1 3165 aa15.99■□□□□ 0.15
TRIM28-211ENST00000597968 DYNC1LI2O43237 492 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-211ENST00000597968 BRDTQ58F21 947 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-211ENST00000597968 RNF207Q6ZRF8 634 aa15.98■□□□□ 0.15
TRIM28-211ENST00000597968 KIAA1211Q6ZU35 1233 aa15.98■□□□□ 0.15
TRIM28-211ENST00000597968 PLEKHM2Q8IWE5 1019 aa15.98■□□□□ 0.15
TRIM28-211ENST00000597968 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.98■□□□□ 0.15
TRIM28-211ENST00000597968 ANKS1AQ92625 1134 aa15.98■□□□□ 0.15
TRIM28-211ENST00000597968 DSCC1Q9BVC3 393 aa15.98■□□□□ 0.15
TRIM28-211ENST00000597968 CTNNA3Q9UI47 895 aa15.98■□□□□ 0.15
TRIM28-211ENST00000597968 RAD50Q92878 1312 aa15.97■□□□□ 0.15
TRIM28-211ENST00000597968 PTPDC1A2A3K4 754 aa15.97■□□□□ 0.15
TRIM28-211ENST00000597968 KPNA6O60684 536 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms