RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 TFIP11Q9UBB9 837 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 FEM1BQ9UK73 627 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 FAM184BQ9ULE4 1060 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 PALD1Q9ULE6 856 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 ERVK-7P63135 1459 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 CA12O43570 354 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 CRCPO75575 148 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 HEXIM1O94992 359 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 GCNT3O95395 438 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 HSPD1P10809 573 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 TNFAIP3P21580 790 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 CYLC1P35663 651 aaPredicted RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 NT5C2P49902 561 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 HMGCS2P54868 508 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 CDC42EP1Q00587 391 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 ITKQ08881 620 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 MYO1EQ12965 1108 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 RAPGEF1Q13905 1077 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 TRIM50Q86XT4 487 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 RPUSD2Q8IZ73 545 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 MB21D1Q8N884 522 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 PRPF38AQ8NAV1 312 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 OR6J1Q8NGC5 347 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 GOLGA5Q8TBA6 731 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 ANKRD36BP1Q96IX9 119 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 CEP170P1Q96L14 293 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 TCEANC2Q96MN5 208 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 TTC1Q99614 292 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 ZNF577Q9BSK1 485 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 SELENOOQ9BVL4 669 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 HMX1Q9NP08 348 aaPredicted RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 DYRK4Q9NR20 520 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 RNF146Q9NTX7 359 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 POLR3EQ9NVU0 708 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 IPO11Q9UI26 975 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 PCDHA12Q9UN75 941 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 ASXL1Q8IXJ9 1541 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 DISP1Q96F81 1524 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 VWA3AA6NCI4 1184 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 BIN1O00499 593 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 MAP3K13O43283 966 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 CYP2E1P05181 493 aaPredicted RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 EIF2AK2P19525 551 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 ATN1P54259 1190 aaPredicted RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 E2F5Q15329 346 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 NBPF20Q3BBV1 942 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 LRCH2Q5VUJ6 765 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 IER5Q5VY09 327 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 GALNT17Q6IS24 598 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 RSBN1LQ6PCB5 846 aaPredicted RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 BRAPQ7Z569 592 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 THNSL1Q8IYQ7 743 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 JAKMIP2Q96AA8 810 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 PPP1R9BQ96SB3 815 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 TBC1D2Q9BYX2 928 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 GCOM2Q9BZD3 368 aaPredicted RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 LRRC4Q9HBW1 653 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 DONSONQ9NYP3 566 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 SUGT1Q9Y2Z0 365 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 PAXBP1Q9Y5B6 917 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 PRAG1Q86YV5 1406 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 TMEM88BA6NKF7 163 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 KCNQ3O43525 872 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 BNIP3LO60238 219 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 CACNB3P54284 484 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 LACTBP83111 547 aaPredicted RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 RAD51Q06609 339 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 CCDC15Q0P6D6 951 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 PTGDRQ13258 359 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 SURF1Q15526 300 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 CCDC157Q569K6 752 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 G2E3Q7L622 706 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 ERO1BQ86YB8 467 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 IFNL3Q8IZI9 196 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 TSPYL6Q8N831 410 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 SPC24Q8NBT2 197 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 SDR42E1Q8WUS8 393 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 SECISBP2LQ93073 1101 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 TMEM169Q96HH4 297 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 ZSCAN10Q96SZ4 725 aaPredicted RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 P2RX7Q99572 595 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 LARP6Q9BRS8 491 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 PFDN4Q9NQP4 134 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 PRDM6Q9NQX0 595 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 ANKFY1Q9P2R3 1169 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 EIF2AK4Q9P2K8 1649 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 TMEM110-MUSTN1A8MSY1 372 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 DDNO94850 711 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 BCRP11274 1271 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 PHKA2P46019 1235 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 PHKA1P46020 1223 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CTCFP49711 727 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 NUCB1Q02818 461 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 NR1H3Q13133 447 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 HLTFQ14527 1009 aaKnown RBP eCLIP3.23□□□□□ -1.893e-6■■□□□ 11.8
SMCHD1-203ENST00000577880 NOLC1Q14978 699 aaKnown RBP eCLIP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CAMK4Q16566 473 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 GEN1Q17RS7 908 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MTERF2Q49AM1 385 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 VWA3BQ502W6 1294 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms