RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 PHC3Q8NDX5 983 aa3.7□□□□□ -1.82
SPG11-223ENST00000560858 ASB16Q96NS5 453 aa3.7□□□□□ -1.82
SPG11-223ENST00000560858 JMJD8Q96S16 334 aa3.7□□□□□ -1.82
SPG11-223ENST00000560858 CDK5RAP1Q96SZ6 601 aaKnown RBP3.7□□□□□ -1.82
SPG11-223ENST00000560858 NOC4LQ9BVI4 516 aaKnown RBP3.7□□□□□ -1.82
SPG11-223ENST00000560858 TSC22D4Q9Y3Q8 395 aa3.7□□□□□ -1.82
SPG11-223ENST00000560858 PRXQ9BXM0 1461 aa3.7□□□□□ -1.82
SPG11-223ENST00000560858 CFAP43Q8NDM7 1665 aa3.7□□□□□ -1.82
SPG11-223ENST00000560858 CLIP1P30622 1438 aa3.7□□□□□ -1.82
SPG11-223ENST00000560858 CUX2O14529 1486 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 ARAP1Q96P48 1450 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 RAPGEF2Q9Y4G8 1499 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 MEIS1O00470 390 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 UBOX5O94941 541 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 ZNF205O95201 554 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 DBHP09172 617 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 DLX2Q07687 328 aaPredicted RBP3.69□□□□□ -1.82
SPG11-223ENST00000560858 CAMK2GQ13555 558 aaPredicted RBP3.69□□□□□ -1.82
SPG11-223ENST00000560858 USP48Q86UV5 1035 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 LGI4Q8N135 537 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 Q8N1X5 172 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 PDLIM7Q9NR12 457 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 AP5S1Q9NUS5 200 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 HCFC2Q9Y5Z7 792 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 CUX1P39880 1505 aa3.69□□□□□ -1.82
SPG11-223ENST00000560858 F13A1P00488 732 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 ASGR2P07307 311 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 LMNB2Q03252 620 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 ARSHQ5FYA8 562 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 BORAQ6PGQ7 559 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 TMEM52Q8NDY8 209 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 RGS22Q8NE09 1264 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 ALG3Q92685 438 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 VPS11Q9H270 941 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 ST6GALNAC2Q9UJ37 374 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 FBXL21Q9UKT6 434 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 MINPP1Q9UNW1 487 aa3.68□□□□□ -1.82
SPG11-223ENST00000560858 GNEQ9Y223 722 aaKnown RBP3.68□□□□□ -1.82
SPG11-223ENST00000560858 NCAPD3P42695 1498 aa3.67□□□□□ -1.82
SPG11-223ENST00000560858 SMARCA5O60264 1052 aaPredicted RBP3.67□□□□□ -1.82
SPG11-223ENST00000560858 DNAJA2O60884 412 aa3.67□□□□□ -1.82
SPG11-223ENST00000560858 CLEC3AO75596 197 aa3.67□□□□□ -1.82
SPG11-223ENST00000560858 AMHP03971 560 aa3.67□□□□□ -1.82
SPG11-223ENST00000560858 MC3RP41968 323 aa3.67□□□□□ -1.82
SPG11-223ENST00000560858 TAF1CQ15572 869 aaPredicted RBP3.67□□□□□ -1.82
SPG11-223ENST00000560858 ADAMTS17Q8TE56 1095 aa3.67□□□□□ -1.82
SPG11-223ENST00000560858 ZNF747Q9BV97 191 aa3.67□□□□□ -1.82
SPG11-223ENST00000560858 PCED1AQ9H1Q7 454 aa3.67□□□□□ -1.82
SPG11-223ENST00000560858 INVSQ9Y283 1065 aa3.67□□□□□ -1.82
SPG11-223ENST00000560858 POLR3KQ9Y2Y1 108 aaPredicted RBP3.67□□□□□ -1.82
SPG11-223ENST00000560858 PCDHB12Q9Y5F1 795 aa3.67□□□□□ -1.82
SPG11-223ENST00000560858 WDR97A6NE52 1622 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 MAP3K1Q13233 1512 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 CTTNBP2Q8WZ74 1663 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 PF4P02776 101 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 P4HBP07237 508 aaKnown RBP3.66□□□□□ -1.82
SPG11-223ENST00000560858 GSTM1P09488 218 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 CCNFP41002 786 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 CEBPAP49715 358 aaPredicted RBP3.66□□□□□ -1.82
SPG11-223ENST00000560858 SURF1Q15526 300 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 RGL3Q3MIN7 710 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 MEI1Q5TIA1 1274 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 CWF19L1Q69YN2 538 aaKnown RBP3.66□□□□□ -1.82
SPG11-223ENST00000560858 ZBTB8AQ96BR9 441 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 MKRN2Q9H000 416 aaKnown RBP3.66□□□□□ -1.82
SPG11-223ENST00000560858 GFOD1Q9NXC2 390 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 GMIPQ9P107 970 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 HS3ST3A1Q9Y663 406 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 RRBP1Q9P2E9 1410 aaKnown RBP3.66□□□□□ -1.82
SPG11-223ENST00000560858 CFTRP13569 1480 aa3.66□□□□□ -1.82
SPG11-223ENST00000560858 KIF21AQ7Z4S6 1674 aa3.65□□□□□ -1.82
SPG11-223ENST00000560858 TIAM1Q13009 1591 aa3.65□□□□□ -1.82
SPG11-223ENST00000560858 PRPF40AO75400 957 aaKnown RBP3.65□□□□□ -1.83
SPG11-223ENST00000560858 GSNP06396 782 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 CTSKP43235 329 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 NOP2P46087 812 aaKnown RBP3.65□□□□□ -1.83
SPG11-223ENST00000560858 ST13P50502 369 aaKnown RBP3.65□□□□□ -1.83
SPG11-223ENST00000560858 CORO7P57737 925 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 MPP2Q14168 576 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 SLC9A5Q14940 896 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 CYP2R1Q6VVX0 501 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 LIMS2Q7Z4I7 341 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 REC114Q7Z4M0 266 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 CABP7Q86V35 215 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 RELL1Q8IUW5 271 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 NLGN2Q8NFZ4 835 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 SMARCC2Q8TAQ2 1214 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 CPA5Q8WXQ8 436 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 DSCC1Q9BVC3 393 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 SSBP3Q9BWW4 388 aaPredicted RBP3.65□□□□□ -1.83
SPG11-223ENST00000560858 KLC2Q9H0B6 622 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 WDR26Q9H7D7 661 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 SPATA6Q9NWH7 488 aaPredicted RBP3.65□□□□□ -1.83
SPG11-223ENST00000560858 PRR13Q9NZ81 148 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 PLA2G2DQ9UNK4 145 aa3.65□□□□□ -1.83
SPG11-223ENST00000560858 CC2D2AQ9P2K1 1620 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 MROH6A6NGR9 719 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 TBC1D8O95759 1140 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 PMLP29590 882 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 TGFB2P61812 414 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms