RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 LINC00116Q8NCU8 138 aa8.49□□□□□ -1.05
VPS50-212ENST00000476413 TARS2Q9BW92 718 aaKnown RBP8.49□□□□□ -1.05
VPS50-212ENST00000476413 LRRC4CQ9HCJ2 640 aa8.49□□□□□ -1.05
VPS50-212ENST00000476413 ATG3Q9NT62 314 aa8.49□□□□□ -1.05
VPS50-212ENST00000476413 NDOR1Q9UHB4 597 aa8.49□□□□□ -1.05
VPS50-212ENST00000476413 TMEFF2Q9UIK5 374 aaPredicted RBP8.49□□□□□ -1.05
VPS50-212ENST00000476413 C2orf71A6NGG8 1288 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 PDE8AO60658 829 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 IGBP1P78318 339 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 STYK1Q6J9G0 422 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 RCSD1Q6JBY9 416 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 USP53Q70EK8 1073 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 THAP5Q7Z6K1 395 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 LRRTM3Q86VH5 581 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 CCDC103Q8IW40 242 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 ZSWIM5Q9P217 1185 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 MAGEC2Q9UBF1 373 aaPredicted RBP8.48□□□□□ -1.05
VPS50-212ENST00000476413 TRAF6Q9Y4K3 522 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 NPFFR2Q9Y5X5 522 aa8.48□□□□□ -1.05
VPS50-212ENST00000476413 EFCAB14O75071 495 aa8.47□□□□□ -1.05
VPS50-212ENST00000476413 SYPP08247 313 aa8.47□□□□□ -1.05
VPS50-212ENST00000476413 IBSPP21815 317 aaPredicted RBP8.47□□□□□ -1.05
VPS50-212ENST00000476413 ACBD5Q5T8D3 534 aaPredicted RBP8.47□□□□□ -1.05
VPS50-212ENST00000476413 KCNT2Q6UVM3 1135 aa8.47□□□□□ -1.05
VPS50-212ENST00000476413 MAMDC2Q7Z304 686 aaPredicted RBP8.47□□□□□ -1.05
VPS50-212ENST00000476413 TMEM151AQ8N4L1 468 aa8.47□□□□□ -1.05
VPS50-212ENST00000476413 UBE2FQ969M7 185 aa8.47□□□□□ -1.05
VPS50-212ENST00000476413 FOXP3Q9BZS1 431 aa8.47□□□□□ -1.05
VPS50-212ENST00000476413 ZC3H7BQ9UGR2 993 aaKnown RBP8.47□□□□□ -1.05
VPS50-212ENST00000476413 TCFL5Q9UL49 500 aa8.47□□□□□ -1.05
VPS50-212ENST00000476413 PITPNM2Q9BZ72 1349 aa8.47□□□□□ -1.05
VPS50-212ENST00000476413 TMEM82A0PJX8 343 aa8.46□□□□□ -1.06
VPS50-212ENST00000476413 ESR1P03372 595 aa8.46□□□□□ -1.06
VPS50-212ENST00000476413 NOP2P46087 812 aaKnown RBP8.46□□□□□ -1.06
VPS50-212ENST00000476413 IFI16Q16666 785 aaKnown RBP8.46□□□□□ -1.06
VPS50-212ENST00000476413 ARHGAP27Q6ZUM4 889 aa8.46□□□□□ -1.06
VPS50-212ENST00000476413 PPIL6Q8IXY8 311 aa8.46□□□□□ -1.06
VPS50-212ENST00000476413 NETO1Q8TDF5 533 aa8.46□□□□□ -1.06
VPS50-212ENST00000476413 DCAF4Q8WV16 495 aa8.46□□□□□ -1.06
VPS50-212ENST00000476413 RNF112Q9ULX5 631 aa8.46□□□□□ -1.06
VPS50-212ENST00000476413 CYP26A1O43174 497 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 DYRK3O43781 588 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 RASGRP1O95267 797 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 PLS3P13797 630 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 CEBPAP49715 358 aaPredicted RBP8.45□□□□□ -1.06
VPS50-212ENST00000476413 PCBP3P57721 371 aaKnown RBP8.45□□□□□ -1.06
VPS50-212ENST00000476413 ZNF460Q14592 562 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 DDX1Q92499 740 aaKnown RBP8.45□□□□□ -1.06
VPS50-212ENST00000476413 SPOCK3Q9BQ16 436 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 CAAP1Q9H8G2 361 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 ATP13A1Q9HD20 1204 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 AP5S1Q9NUS5 200 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 CLEC1BQ9P126 229 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 PIM2Q9P1W9 311 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 MAPRE3Q9UPY8 281 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 ZNF281Q9Y2X9 895 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 PCDHA11Q9Y5I1 949 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 TNPO3Q9Y5L0 923 aaKnown RBP8.45□□□□□ -1.06
VPS50-212ENST00000476413 SNX11Q9Y5W9 270 aa8.45□□□□□ -1.06
VPS50-212ENST00000476413 TCRBV16S1A1N1A0A5B0 115 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 FGF10O15520 208 aaPredicted RBP8.44□□□□□ -1.06
VPS50-212ENST00000476413 MSCO60682 206 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 GSTM1P09488 218 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 FOSL1P15407 271 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 POU3F2P20265 443 aaPredicted RBP8.44□□□□□ -1.06
VPS50-212ENST00000476413 HOXA10P31260 410 aaPredicted RBP8.44□□□□□ -1.06
VPS50-212ENST00000476413 ANAPC15P60006 121 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 EEF1DP3Q658K8 133 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 RNF111Q6ZNA4 994 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 JAMLQ86YT9 394 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 UBR7Q8N806 425 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 CHAC2Q8WUX2 184 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 STAG1Q8WVM7 1258 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 PHF20Q9BVI0 1012 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 DUSP13Q9UII6 198 aa8.44□□□□□ -1.06
VPS50-212ENST00000476413 TMEM265A0A087WTH1 108 aa8.43□□□□□ -1.06
VPS50-212ENST00000476413 CRTAMO95727 393 aa8.43□□□□□ -1.06
VPS50-212ENST00000476413 LCP1P13796 627 aa8.43□□□□□ -1.06
VPS50-212ENST00000476413 SEPHS1P49903 392 aa8.43□□□□□ -1.06
VPS50-212ENST00000476413 TEKQ02763 1124 aa8.43□□□□□ -1.06
VPS50-212ENST00000476413 E4F1Q66K89 784 aaPredicted RBP8.43□□□□□ -1.06
VPS50-212ENST00000476413 MBLAC2Q68D91 279 aa8.43□□□□□ -1.06
VPS50-212ENST00000476413 CNNM4Q6P4Q7 775 aa8.43□□□□□ -1.06
VPS50-212ENST00000476413 RSPO2Q6UXX9 243 aaPredicted RBP8.43□□□□□ -1.06
VPS50-212ENST00000476413 ZPBP2Q6X784 338 aa8.43□□□□□ -1.06
VPS50-212ENST00000476413 TMPRSS7Q7RTY8 843 aa8.43□□□□□ -1.06
VPS50-212ENST00000476413 MTFR1LQ9H019 292 aa8.43□□□□□ -1.06
VPS50-212ENST00000476413 MEFVO15553 781 aaPredicted RBP8.42□□□□□ -1.06
VPS50-212ENST00000476413 FKTNO75072 461 aa8.42□□□□□ -1.06
VPS50-212ENST00000476413 RAB11FIP3O75154 756 aa8.42□□□□□ -1.06
VPS50-212ENST00000476413 ASLP04424 464 aa8.42□□□□□ -1.06
VPS50-212ENST00000476413 KCNA6P17658 529 aa8.42□□□□□ -1.06
VPS50-212ENST00000476413 INF2Q27J81 1249 aa8.42□□□□□ -1.06
VPS50-212ENST00000476413 SLC51AQ86UW1 340 aa8.42□□□□□ -1.06
VPS50-212ENST00000476413 AFAP1L2Q8N4X5 818 aa8.42□□□□□ -1.06
VPS50-212ENST00000476413 MMP19Q99542 508 aa8.42□□□□□ -1.06
VPS50-212ENST00000476413 ZFYVE21Q9BQ24 234 aa8.42□□□□□ -1.06
VPS50-212ENST00000476413 GPR27Q9NS67 375 aa8.42□□□□□ -1.06
VPS50-212ENST00000476413 PCDHA9Q9Y5H5 950 aa8.42□□□□□ -1.06
VPS50-212ENST00000476413 LTBRP36941 435 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms