RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 ZNF396Q96N95 335 aaPredicted RBP26.37■■□□□ 1.81
CPSF4-204ENST00000436336 ASCC2Q9H1I8 757 aaPredicted RBP26.37■■□□□ 1.81
CPSF4-204ENST00000436336 PCDHA6Q9UN73 950 aa26.37■■□□□ 1.81
CPSF4-204ENST00000436336 MRPL11Q9Y3B7 192 aaKnown RBP26.37■■□□□ 1.81
CPSF4-204ENST00000436336 PCDHA8Q9Y5H6 950 aa26.37■■□□□ 1.81
CPSF4-204ENST00000436336 KRT85P78386 507 aa26.36■■□□□ 1.81
CPSF4-204ENST00000436336 TEX2Q8IWB9 1127 aa26.36■■□□□ 1.81
CPSF4-204ENST00000436336 CPXCR1Q8N123 301 aa26.36■■□□□ 1.81
CPSF4-204ENST00000436336 REXO1Q8N1G1 1221 aaKnown RBP26.36■■□□□ 1.81
CPSF4-204ENST00000436336 AGBL1Q96MI9 1066 aa26.36■■□□□ 1.81
CPSF4-204ENST00000436336 RAVER2Q9HCJ3 691 aaKnown RBP26.36■■□□□ 1.81
CPSF4-204ENST00000436336 SLC45A1Q9Y2W3 748 aa26.36■■□□□ 1.81
CPSF4-204ENST00000436336 ATP2A1O14983 1001 aa26.36■■□□□ 1.81
CPSF4-204ENST00000436336 LBX2Q6XYB7 198 aa26.36■■□□□ 1.81
CPSF4-204ENST00000436336 HHIPL1Q96JK4 782 aa26.36■■□□□ 1.81
CPSF4-204ENST00000436336 ABT1Q9ULW3 272 aaKnown RBP26.36■■□□□ 1.81
CPSF4-204ENST00000436336 MB21D1Q8N884 522 aa26.35■■□□□ 1.81
CPSF4-204ENST00000436336 BRI3BPQ8WY22 251 aa26.35■■□□□ 1.81
CPSF4-204ENST00000436336 P2RX7Q99572 595 aaKnown RBP26.35■■□□□ 1.81
CPSF4-204ENST00000436336 CFAP45Q9UL16 551 aa26.35■■□□□ 1.81
CPSF4-204ENST00000436336 PNMA3Q9UL41 463 aa26.35■■□□□ 1.81
CPSF4-204ENST00000436336 SLC10A3P09131 477 aa26.34■■□□□ 1.81
CPSF4-204ENST00000436336 TAL1P17542 331 aaPredicted RBP26.34■■□□□ 1.81
CPSF4-204ENST00000436336 CLK2P49760 499 aaKnown RBP26.34■■□□□ 1.81
CPSF4-204ENST00000436336 RILPL1Q5EBL4 403 aa26.34■■□□□ 1.81
CPSF4-204ENST00000436336 ANKRD23Q86SG2 305 aa26.34■■□□□ 1.81
CPSF4-204ENST00000436336 RASGRP4Q8TDF6 673 aa26.34■■□□□ 1.81
CPSF4-204ENST00000436336 ZNF214Q9UL59 606 aaPredicted RBP26.34■■□□□ 1.81
CPSF4-204ENST00000436336 CCDC194A0A1B0GVG4 234 aa26.34■■□□□ 1.81
CPSF4-204ENST00000436336 NCLP19338 710 aaKnown RBP26.34■■□□□ 1.81
CPSF4-204ENST00000436336 HERVK_113P62684 666 aa26.34■■□□□ 1.81
CPSF4-204ENST00000436336 TMEM132BQ14DG7 1078 aa26.34■■□□□ 1.81
CPSF4-204ENST00000436336 EARS2Q5JPH6 523 aaKnown RBP26.34■■□□□ 1.81
CPSF4-204ENST00000436336 PIK3AP1Q6ZUJ8 805 aa26.34■■□□□ 1.81
CPSF4-204ENST00000436336 KRT25Q7Z3Z0 450 aa26.34■■□□□ 1.81
CPSF4-204ENST00000436336 BIN2Q9UBW5 565 aaPredicted RBP26.34■■□□□ 1.81
CPSF4-204ENST00000436336 CNPY2Q9Y2B0 182 aa26.34■■□□□ 1.81
CPSF4-204ENST00000436336 TESPA1A2RU30 521 aaPredicted RBP26.33■■□□□ 1.81
CPSF4-204ENST00000436336 OPLAHO14841 1288 aa26.33■■□□□ 1.81
CPSF4-204ENST00000436336 CCDC102AQ96A19 550 aa26.33■■□□□ 1.81
CPSF4-204ENST00000436336 NOL7Q9UMY1 257 aaKnown RBP26.33■■□□□ 1.81
CPSF4-204ENST00000436336 BTBD19C9JJ37 291 aa26.32■■□□□ 1.8
CPSF4-204ENST00000436336 GOLGA6L22H0YM25 854 aa26.32■■□□□ 1.8
CPSF4-204ENST00000436336 ALAS1P13196 640 aa26.32■■□□□ 1.8
CPSF4-204ENST00000436336 MCM4P33991 863 aa26.32■■□□□ 1.8
CPSF4-204ENST00000436336 MCTP2Q6DN12 878 aa26.32■■□□□ 1.8
CPSF4-204ENST00000436336 USP28Q96RU2 1077 aa26.32■■□□□ 1.8
CPSF4-204ENST00000436336 TEX13BQ9BXU2 312 aa26.32■■□□□ 1.8
CPSF4-204ENST00000436336 TFIP11Q9UBB9 837 aaKnown RBP26.32■■□□□ 1.8
CPSF4-204ENST00000436336 MYH7BA7E2Y1 1941 aa26.32■■□□□ 1.8
CPSF4-204ENST00000436336 FAM205CA6NFA0 338 aa26.31■■□□□ 1.8
CPSF4-204ENST00000436336 MANSC4A6NHS7 340 aaPredicted RBP26.31■■□□□ 1.8
CPSF4-204ENST00000436336 PIK3CDO00329 1044 aa26.31■■□□□ 1.8
CPSF4-204ENST00000436336 MEIS2O14770 477 aa26.31■■□□□ 1.8
CPSF4-204ENST00000436336 NOM1Q5C9Z4 860 aaKnown RBP26.31■■□□□ 1.8
CPSF4-204ENST00000436336 JAKMIP3Q5VZ66 844 aa26.31■■□□□ 1.8
CPSF4-204ENST00000436336 SCAND2PQ9GZW5 306 aaPredicted RBP26.31■■□□□ 1.8
CPSF4-204ENST00000436336 PDHXO00330 501 aa26.31■■□□□ 1.8
CPSF4-204ENST00000436336 TRAPPC10P48553 1259 aa26.31■■□□□ 1.8
CPSF4-204ENST00000436336 UBE2SQ16763 222 aa26.31■■□□□ 1.8
CPSF4-204ENST00000436336 SNRNP48Q6IEG0 339 aaKnown RBP26.31■■□□□ 1.8
CPSF4-204ENST00000436336 GTF3C2Q8WUA4 911 aaPredicted RBP26.31■■□□□ 1.8
CPSF4-204ENST00000436336 TMEM260Q9NX78 707 aa26.31■■□□□ 1.8
CPSF4-204ENST00000436336 TOB1P50616 345 aaPredicted RBP26.3■■□□□ 1.8
CPSF4-204ENST00000436336 AP3B2Q13367 1082 aa26.3■■□□□ 1.8
CPSF4-204ENST00000436336 NONOQ15233 471 aaKnown RBP eCLIP26.3■■□□□ 1.8
CPSF4-204ENST00000436336 NFKBIBQ15653 356 aa26.3■■□□□ 1.8
CPSF4-204ENST00000436336 TKFCQ3LXA3 575 aa26.3■■□□□ 1.8
CPSF4-204ENST00000436336 USP17L6PQ6QN14 398 aa26.3■■□□□ 1.8
CPSF4-204ENST00000436336 POLR3EQ9NVU0 708 aa26.3■■□□□ 1.8
CPSF4-204ENST00000436336 FAM155AB1AL88 458 aaPredicted RBP26.29■■□□□ 1.8
CPSF4-204ENST00000436336 FIBPO43427 364 aa26.29■■□□□ 1.8
CPSF4-204ENST00000436336 STAT3P40763 770 aa26.29■■□□□ 1.8
CPSF4-204ENST00000436336 CSPP1Q1MSJ5 1256 aa26.29■■□□□ 1.8
CPSF4-204ENST00000436336 POTEEQ6S8J3 1075 aa26.29■■□□□ 1.8
CPSF4-204ENST00000436336 MCF2L2Q86YR7 1114 aa26.29■■□□□ 1.8
CPSF4-204ENST00000436336 SAMD3Q8N6K7 520 aa26.29■■□□□ 1.8
CPSF4-204ENST00000436336 CLEC4DQ8WXI8 215 aa26.29■■□□□ 1.8
CPSF4-204ENST00000436336 TRERF1Q96PN7 1200 aa26.29■■□□□ 1.8
CPSF4-204ENST00000436336 RTEL1Q9NZ71 1219 aa26.29■■□□□ 1.8
CPSF4-204ENST00000436336 ANO1Q5XXA6 986 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 PTPN18Q99952 460 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 BTBD7Q9P203 1132 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 DDX11L8A8MPP1 907 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 GCOM1H8Y6P7 765 aaPredicted RBP26.28■■□□□ 1.8
CPSF4-204ENST00000436336 CFBP00751 764 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 FOSP01100 380 aaPredicted RBP26.28■■□□□ 1.8
CPSF4-204ENST00000436336 POLR2MP0CAP2 368 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 NASPP49321 788 aaPredicted RBP26.28■■□□□ 1.8
CPSF4-204ENST00000436336 INHBEP58166 350 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 GHRHRQ02643 423 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 CEBPZQ03701 1054 aaKnown RBP26.28■■□□□ 1.8
CPSF4-204ENST00000436336 PLS1Q14651 629 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 FAM43AQ8N2R8 423 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 TMEM87AQ8NBN3 555 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 FTOQ9C0B1 505 aaKnown RBP eCLIP26.28■■□□□ 1.8
CPSF4-204ENST00000436336 GDPD2Q9HCC8 539 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 RNF146Q9NTX7 359 aa26.28■■□□□ 1.8
CPSF4-204ENST00000436336 MAP3K20Q9NYL2 800 aaKnown RBP26.28■■□□□ 1.8
CPSF4-204ENST00000436336 RABGAP1Q9Y3P9 1069 aa26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms