RNA–Protein interactions for RNA: YAL043C

PTA1, Transcript of Subunit of holo-CPF, yeast

Gene PTA1, Length 2,358 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTA1	YAL043C	MRH1	Q12117	320 aa	Predicted RBP	4.04	□□□□□ -1.76
PTA1	YAL043C	HOS1	Q12214	470 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	TAF3	Q12297	353 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	HSH49	Q99181	213 aa	Predicted RBP	4.04	□□□□□ -1.76
PTA1	YAL043C	RPN13	O13563	156 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	COS2	P0CX12	379 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	COS3	P0CX13	379 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	YPK1	P12688	680 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
PTA1	YAL043C	CLB2	P24869	491 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	SDH3	P33421	198 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	SPC34	P36131	295 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	SEA4	P38164	1038 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	EXO84	P38261	753 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	AMN1	P38285	549 aa	Predicted RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	DHH1	P39517	506 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	EDC3	P39998	551 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	YIL089W	P40500	205 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	RLP7	P40693	322 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	COS4	P43542	379 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	PTR3	P43606	678 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	IML2	P47031	731 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	EFM5	P53200	248 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	NMA2	P53204	395 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	NOP19	P53317	196 aa	Predicted RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	LSC1	P53598	329 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	SIW14	P53965	281 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	RSM28	Q03430	361 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	MGR3	Q04472	501 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	HDA3	Q06623	655 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	ESC8	Q08119	714 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	GPM2	Q12008	311 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	MOT1	P32333	1867 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	THP2	O13539	261 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	MET17	P06106	444 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	MER1	P16523	270 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	HSP60	P19882	572 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	APN1	P22936	367 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	PHO3	P24031	467 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	YCR090C	P25654	182 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	PEX3	P28795	441 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	RME1	P32338	300 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	AEP1	P32493	518 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	GCS1	P35197	352 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	YBR139W	P38109	508 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	MRP21	P38175	177 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	FES1	P38260	290 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	YHR202W	P38887	602 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	PCF11	P39081	626 aa	Predicted RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	YER034W	P40022	185 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	MND2	P40577	368 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	EFM3	P47163	339 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	RMR1	P53060	241 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	RNH70	P53331	553 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	RCF2	P53721	224 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	YNL181W	P53878	407 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	RLI1	Q03195	608 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	YDR131C	Q03899	556 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	PEX12	Q04370	399 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	ECM30	Q06673	1274 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	NUS1	Q12063	375 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	SPE3	Q12074	293 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	MSH5	Q12175	901 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	PKH2	Q12236	1081 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	SNF8	Q12483	233 aa		4.03	□□□□□ -1.76
PTA1	YAL043C	CMR1	Q12510	522 aa	Known RBP	4.03	□□□□□ -1.76
PTA1	YAL043C	PHO4	P07270	312 aa	Known RBP	4.02	□□□□□ -1.77
PTA1	YAL043C	BCY1	P07278	416 aa	Known RBP	4.02	□□□□□ -1.77
PTA1	YAL043C	CIN8	P27895	1000 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	SYN8	P31377	255 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	FUN30	P31380	1131 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	ACP1	P32463	125 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	NUP2	P32499	720 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	CYS4	P32582	507 aa	Known RBP	4.02	□□□□□ -1.77
PTA1	YAL043C	TYE7	P33122	291 aa	Predicted RBP	4.02	□□□□□ -1.77
PTA1	YAL043C	SKT5	P34226	696 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	MRPL17	P36528	281 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	SHE3	P38272	425 aa	Known RBP	4.02	□□□□□ -1.77
PTA1	YAL043C	YBR285W	P38354	144 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	VMA22	P38784	181 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	TVP23	P38962	199 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	PRM9	P39551	298 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	SEO1	P39709	593 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	MEP2	P41948	499 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	STB1	P42845	420 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	UPF3	P48412	387 aa	Known RBP	4.02	□□□□□ -1.77
PTA1	YAL043C	DSL1	P53847	754 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	COG5	P53951	403 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	YKR005C	Q02203	525 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	MET31	Q03081	177 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	SNZ1	Q03148	297 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.02	□□□□□ -1.77	not detected
PTA1	YAL043C	YLR126C	Q12288	251 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	TPK1	P06244	397 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	RPB4	P20433	221 aa	Predicted RBP	4.02	□□□□□ -1.77
PTA1	YAL043C	TRX2	P22803	104 aa	Known RBP	4.02	□□□□□ -1.77
PTA1	YAL043C	DCC1	P25559	380 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	HIR2	P32480	875 aa		4.02	□□□□□ -1.77
PTA1	YAL043C	RPT1	P33299	467 aa	Known RBP	4.02	□□□□□ -1.77
PTA1	YAL043C	TKL2	P33315	681 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms