RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CSRP2Q16527 193 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 RGL3Q3MIN7 710 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 FAM26FQ5R3K3 315 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 TTBK2Q6IQ55 1244 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 BORAQ6PGQ7 559 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 FAM124AQ86V42 546 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 SCUBE1Q8IWY4 988 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 DNAJC10Q8IXB1 793 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 LINC00482Q8N8I6 264 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 TMEM52Q8NDY8 209 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 FAM13CQ8NE31 585 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 TMC1Q8TDI8 760 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 CPA5Q8WXQ8 436 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 CCDC74BQ96LY2 380 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 OSBPL7Q9BZF2 842 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 IKZF4Q9H2S9 585 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 TUT1Q9H6E5 874 aaKnown RBP1.46□□□□□ -2.18
VPS35-212ENST00000640313 ERVK13-1Q9NX77 482 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 PPP4R1LQ9P1A2 415 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 PLA2G2DQ9UNK4 145 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 PCDHB5Q9Y5E4 795 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 NPIPB8E9PQR5 432 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 GPR42O15529 346 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 LAMTOR5O43504 91 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 FKTNO75072 461 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 PPFIA2O75334 1257 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 PLCG1P19174 1290 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 LMO1P25800 156 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 RPL13P26373 211 aaKnown RBP1.45□□□□□ -2.18
VPS35-212ENST00000640313 TNNI2P48788 182 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 SELENOPP49908 381 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 FOXE3Q13461 319 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 DSC3Q14574 896 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 ENOX2Q16206 610 aaKnown RBP1.45□□□□□ -2.18
VPS35-212ENST00000640313 TSNAXIP1Q2TAA8 658 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 NBPF9Q3BBW0 867 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 KRTAP15-1Q3LI76 137 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 MIIPQ5JXC2 388 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 KRTAP5-11Q6L8G4 156 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 AGMOQ6ZNB7 445 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 NLGN2Q8NFZ4 835 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 FBF1Q8TES7 1133 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 WWC2-AS2Q96NR7 200 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 NOX5Q96PH1 765 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 JMJD8Q96S16 334 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 DEF6Q9H4E7 631 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 IMPACTQ9P2X3 320 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 HCFC2Q9Y5Z7 792 aa1.45□□□□□ -2.18
VPS35-212ENST00000640313 PRR36Q9H6K5 1346 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 NPEPPSL1A6NEC2 478 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 PATE3B3GLJ2 98 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 F8W031 263 aaPredicted RBP1.44□□□□□ -2.18
VPS35-212ENST00000640313 MUSKO15146 869 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 SMARCA5O60264 1052 aaPredicted RBP1.44□□□□□ -2.18
VPS35-212ENST00000640313 ZNF205O95201 554 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 BMP8BP34820 402 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 MC3RP41968 323 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 INHBCP55103 352 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 KRTAP10-11P60412 298 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 RNF4P78317 190 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 CACNB2Q08289 660 aaPredicted RBP1.44□□□□□ -2.18
VPS35-212ENST00000640313 ABHD18Q0P651 414 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 SEPT6Q14141 434 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 TPRNQ4KMQ1 711 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 SPDYAQ5MJ70 313 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 HLA-DQA1Q5Y7H0 255 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 DPY19L2P1Q6NXN4 242 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 ZNF585AQ6P3V2 769 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 TMC3Q7Z5M5 1100 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 PLEKHH3Q7Z736 793 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 CIR1Q86X95 450 aaPredicted RBP1.44□□□□□ -2.18
VPS35-212ENST00000640313 PALM2Q8IXS6 379 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 PHACTR4Q8IZ21 702 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 SMARCC2Q8TAQ2 1214 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 ZNF503Q96F45 646 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 TSPAN17Q96FV3 270 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 CRAMP1Q96RY5 1269 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 ZNF341Q9BYN7 854 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 TRIM8Q9BZR9 551 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 MIR1-1HGQ9H1L0 117 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 ANTXR1Q9H6X2 564 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 PCDH18Q9HCL0 1135 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 PDLIM7Q9NR12 457 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 FAM8A1Q9UBU6 413 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 TCAF1Q9Y4C2 921 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 CORINQ9Y5Q5 1042 aa1.44□□□□□ -2.18
VPS35-212ENST00000640313 A0A087X1B8 175 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 PNMA6FA0A0J9YX94 578 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 A0A1W2PQ27 194 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 A0A1W2PQ64 194 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 A0A1W2PQC6 194 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 A0A1W2PQD8 194 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 C9orf118A6NHY6 69 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 CHURC1-FNTBB4DL54 471 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 RGS13O14921 159 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 SIGLEC6O43699 453 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 NARSO43776 548 aaKnown RBP1.43□□□□□ -2.18
VPS35-212ENST00000640313 B4GALT3O60512 393 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 ZNF623O75123 536 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 PRAMEF1O95521 474 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms