RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 LPAR1Q92633 364 aa20.19■□□□□ 0.82
SHKBP1-224ENST00000600718 WDR18Q9BV38 432 aa20.19■□□□□ 0.82
SHKBP1-224ENST00000600718 AS3MTQ9HBK9 375 aa20.19■□□□□ 0.82
SHKBP1-224ENST00000600718 CUTAO60888 179 aa20.18■□□□□ 0.82
SHKBP1-224ENST00000600718 ZYXQ15942 572 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-224ENST00000600718 FSIP1Q8NA03 581 aa20.18■□□□□ 0.82
SHKBP1-224ENST00000600718 RASGRP4Q8TDF6 673 aa20.18■□□□□ 0.82
SHKBP1-224ENST00000600718 MRPS27Q92552 414 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-224ENST00000600718 GLT8D2Q9H1C3 349 aa20.18■□□□□ 0.82
SHKBP1-224ENST00000600718 RIC8AQ9NPQ8 531 aa20.18■□□□□ 0.82
SHKBP1-224ENST00000600718 DACT1Q9NYF0 836 aa20.18■□□□□ 0.82
SHKBP1-224ENST00000600718 FEM1BQ9UK73 627 aa20.18■□□□□ 0.82
SHKBP1-224ENST00000600718 PRR12Q9ULL5 1215 aa20.18■□□□□ 0.82
SHKBP1-224ENST00000600718 ATAD5Q96QE3 1844 aa20.18■□□□□ 0.82
SHKBP1-224ENST00000600718 IQCA1LA6NCM1 817 aa20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 CMA1P23946 247 aa20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 MRPL12P52815 198 aaKnown RBP20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 TRAF1Q13077 416 aa20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 KRI1Q8N9T8 703 aaKnown RBP20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 AMNQ9BXJ7 453 aa20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 NR1I2O75469 434 aa20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 NOL9Q5SY16 702 aaKnown RBP20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 KRT26Q7Z3Y9 468 aa20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 REXO1Q8N1G1 1221 aaKnown RBP20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 ZKSCAN4Q969J2 545 aaPredicted RBP20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 PCDHA1Q9Y5I3 950 aa20.17■□□□□ 0.82
SHKBP1-224ENST00000600718 SSC5DA1L4H1 1573 aa20.16■□□□□ 0.82
SHKBP1-224ENST00000600718 USP2O75604 605 aaPredicted RBP20.16■□□□□ 0.82
SHKBP1-224ENST00000600718 PTPRAP18433 802 aa20.16■□□□□ 0.82
SHKBP1-224ENST00000600718 PTPREP23469 700 aa20.16■□□□□ 0.82
SHKBP1-224ENST00000600718 USP14P54578 494 aa20.16■□□□□ 0.82
SHKBP1-224ENST00000600718 ZNF174Q15697 407 aa20.16■□□□□ 0.82
SHKBP1-224ENST00000600718 FBXO11Q86XK2 927 aa20.16■□□□□ 0.82
SHKBP1-224ENST00000600718 GOLPH3LQ9H4A5 285 aa20.16■□□□□ 0.82
SHKBP1-224ENST00000600718 ADM5C9JUS6 153 aa20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 WDR46O15213 610 aaKnown RBP20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 FAM160A1Q05DH4 1040 aa20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 NONOQ15233 471 aaKnown RBP eCLIP20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 ENGASEQ8NFI3 743 aa20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 CUL5Q93034 780 aa20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 TAF1DQ9H5J8 278 aaPredicted RBP20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 SRPRBQ9Y5M8 271 aaKnown RBP20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 SYCE3A1L190 88 aa20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 ZNF579Q8NAF0 562 aaKnown RBP20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 ZNF280CQ8ND82 737 aa20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 NUP62CLQ9H1M0 184 aa20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 PSTPIP2Q9H939 334 aa20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 BIN2Q9UBW5 565 aaPredicted RBP20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 FBXO2Q9UK22 296 aaPredicted RBP20.15■□□□□ 0.82
SHKBP1-224ENST00000600718 PPP1R12BO60237 982 aaPredicted RBP20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 SPP2Q13103 211 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 SNW1Q13573 536 aaKnown RBP20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 LRSAM1Q6UWE0 723 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 CLSTN2Q9H4D0 955 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 DOCK1Q14185 1865 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 GOLGA6L3A6NEY3 463 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 WNT7AO00755 349 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 BACE1P56817 501 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 SNAP25P60880 206 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 MAP3K9P80192 1104 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 INF2Q27J81 1249 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 PNMA8AQ86V59 439 aaPredicted RBP20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 FERMT2Q96AC1 680 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 RANBP17Q9H2T7 1088 aaKnown RBP20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 FZD1Q9UP38 647 aa20.14■□□□□ 0.81
SHKBP1-224ENST00000600718 A0A1B0GVL5 298 aa20.13■□□□□ 0.81
SHKBP1-224ENST00000600718 FSD2A1L4K1 749 aa20.13■□□□□ 0.81
SHKBP1-224ENST00000600718 CLK2P49760 499 aaKnown RBP20.13■□□□□ 0.81
SHKBP1-224ENST00000600718 ATP2C1P98194 919 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-224ENST00000600718 MTMR2Q13614 643 aa20.13■□□□□ 0.81
SHKBP1-224ENST00000600718 JAKMIP3Q5VZ66 844 aa20.13■□□□□ 0.81
SHKBP1-224ENST00000600718 RESP18Q5W5W9 173 aa20.13■□□□□ 0.81
SHKBP1-224ENST00000600718 FMR1NBQ8N0W7 255 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-224ENST00000600718 KIFC2Q96AC6 838 aa20.13■□□□□ 0.81
SHKBP1-224ENST00000600718 CLIC6Q96NY7 704 aa20.13■□□□□ 0.81
SHKBP1-224ENST00000600718 ZHX2Q9Y6X8 837 aa20.13■□□□□ 0.81
SHKBP1-224ENST00000600718 FAM237AA0A1B0GTK4 181 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 C19orf81C9J6K1 198 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 MCM7P33993 719 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 NDUFA8P51970 172 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 PTGDRQ13258 359 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 MCTP2Q6DN12 878 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 SHC4Q6S5L8 630 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 EMILIN3Q9NT22 766 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 TMEM260Q9NX78 707 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 POLR2AP24928 1970 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 POTECB2RU33 542 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 KINO60870 393 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 NF2P35240 595 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 PRKG1Q13976 671 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 NEK8Q86SG6 692 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 GAS2L3Q86XJ1 694 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 TEX2Q8IWB9 1127 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 TNMDQ9H2S6 317 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 SCN4AP35499 1836 aa20.12■□□□□ 0.81
SHKBP1-224ENST00000600718 ORC2Q13416 577 aaPredicted RBP20.11■□□□□ 0.81
SHKBP1-224ENST00000600718 EAPPQ56P03 285 aaPredicted RBP20.11■□□□□ 0.81
SHKBP1-224ENST00000600718 DLK2Q6UY11 383 aa20.11■□□□□ 0.81
SHKBP1-224ENST00000600718 PRPF38AQ8NAV1 312 aaKnown RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms