RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TPRNQ4KMQ1 711 aa24.09■■□□□ 1.45
VPS28-208ENST00000527797 AMNQ9BXJ7 453 aa24.09■■□□□ 1.45
VPS28-208ENST00000527797 RRAGCQ9HB90 399 aa24.09■■□□□ 1.45
VPS28-208ENST00000527797 MYH15Q9Y2K3 1946 aa24.09■■□□□ 1.45
VPS28-208ENST00000527797 CCDC194A0A1B0GVG4 234 aa24.08■■□□□ 1.45
VPS28-208ENST00000527797 FAM205CA6NFA0 338 aa24.08■■□□□ 1.45
VPS28-208ENST00000527797 ADAMTS3O15072 1205 aa24.08■■□□□ 1.45
VPS28-208ENST00000527797 FBXO11Q86XK2 927 aa24.08■■□□□ 1.45
VPS28-208ENST00000527797 EMILIN3Q9NT22 766 aa24.08■■□□□ 1.45
VPS28-208ENST00000527797 PCDHA1Q9Y5I3 950 aa24.08■■□□□ 1.45
VPS28-208ENST00000527797 SNCAIPQ9Y6H5 919 aa24.08■■□□□ 1.45
VPS28-208ENST00000527797 SRCAPQ6ZRS2 3230 aa24.08■■□□□ 1.44
VPS28-208ENST00000527797 TRIM75PA6NK02 468 aa24.07■■□□□ 1.44
VPS28-208ENST00000527797 ATP2B1P20020 1258 aa24.07■■□□□ 1.44
VPS28-208ENST00000527797 ME1P48163 572 aa24.07■■□□□ 1.44
VPS28-208ENST00000527797 SNAP25P60880 206 aa24.07■■□□□ 1.44
VPS28-208ENST00000527797 TRAF1Q13077 416 aa24.07■■□□□ 1.44
VPS28-208ENST00000527797 TTLL12Q14166 644 aaPredicted RBP24.07■■□□□ 1.44
VPS28-208ENST00000527797 KIFC2Q96AC6 838 aa24.07■■□□□ 1.44
VPS28-208ENST00000527797 PGBD1Q96JS3 809 aa24.07■■□□□ 1.44
VPS28-208ENST00000527797 TRAPPC10P48553 1259 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 PTPAQ15257 358 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 NOM1Q5C9Z4 860 aaKnown RBP24.06■■□□□ 1.44
VPS28-208ENST00000527797 KRT25Q7Z3Z0 450 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 RASGRP4Q8TDF6 673 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 GLT8D2Q9H1C3 349 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 CEP131Q9UPN4 1083 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 UTRNP46939 3433 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 POTEIP0CG38 1075 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 POTEJP0CG39 1038 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 MRPL12P52815 198 aaKnown RBP24.06■■□□□ 1.44
VPS28-208ENST00000527797 MAP3K11Q16584 847 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 ANKRD13AQ8IZ07 590 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 JMYQ8N9B5 988 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 RIC8AQ9NPQ8 531 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 AFG3L2Q9Y4W6 797 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 PCDHB6Q9Y5E3 794 aa24.06■■□□□ 1.44
VPS28-208ENST00000527797 VCAM1P19320 739 aa24.05■■□□□ 1.44
VPS28-208ENST00000527797 MAP1SQ66K74 1059 aaPredicted RBP24.05■■□□□ 1.44
VPS28-208ENST00000527797 ARMC9Q7Z3E5 817 aa24.05■■□□□ 1.44
VPS28-208ENST00000527797 REXO1Q8N1G1 1221 aaKnown RBP24.05■■□□□ 1.44
VPS28-208ENST00000527797 CUL5Q93034 780 aa24.05■■□□□ 1.44
VPS28-208ENST00000527797 C12orf42Q96LP6 360 aa24.05■■□□□ 1.44
VPS28-208ENST00000527797 RANBP17Q9H2T7 1088 aaKnown RBP24.05■■□□□ 1.44
VPS28-208ENST00000527797 PCDHA7Q9UN72 937 aa24.05■■□□□ 1.44
VPS28-208ENST00000527797 PPP6R2O75170 966 aa24.04■■□□□ 1.44
VPS28-208ENST00000527797 DGKZQ13574 1117 aa24.04■■□□□ 1.44
VPS28-208ENST00000527797 TTC38Q5R3I4 469 aa24.04■■□□□ 1.44
VPS28-208ENST00000527797 CAVIN1Q6NZI2 390 aaKnown RBP24.04■■□□□ 1.44
VPS28-208ENST00000527797 PRPF38AQ8NAV1 312 aaKnown RBP24.04■■□□□ 1.44
VPS28-208ENST00000527797 RBM46Q8TBY0 533 aaKnown RBP24.04■■□□□ 1.44
VPS28-208ENST00000527797 SLF1Q9BQI6 1058 aa24.04■■□□□ 1.44
VPS28-208ENST00000527797 TANGO6Q9C0B7 1094 aa24.04■■□□□ 1.44
VPS28-208ENST00000527797 GZF1Q9H116 711 aaPredicted RBP24.04■■□□□ 1.44
VPS28-208ENST00000527797 RPAP3Q9H6T3 665 aaPredicted RBP24.04■■□□□ 1.44
VPS28-208ENST00000527797 PSTPIP2Q9H939 334 aa24.04■■□□□ 1.44
VPS28-208ENST00000527797 FBXO28Q9NVF7 368 aa24.04■■□□□ 1.44
VPS28-208ENST00000527797 TMOD4Q9NZQ9 345 aa24.04■■□□□ 1.44
VPS28-208ENST00000527797 HMGCS2P54868 508 aa24.03■■□□□ 1.44
VPS28-208ENST00000527797 SAMD1Q6SPF0 538 aaPredicted RBP24.03■■□□□ 1.44
VPS28-208ENST00000527797 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.03■■□□□ 1.44
VPS28-208ENST00000527797 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.03■■□□□ 1.44
VPS28-208ENST00000527797 BIN2Q9UBW5 565 aaPredicted RBP24.03■■□□□ 1.44
VPS28-208ENST00000527797 BMP15O95972 392 aa24.02■■□□□ 1.44
VPS28-208ENST00000527797 NONOQ15233 471 aaKnown RBP eCLIP24.02■■□□□ 1.44
VPS28-208ENST00000527797 USH1GQ495M9 461 aa24.02■■□□□ 1.44
VPS28-208ENST00000527797 ADALQ6DHV7 355 aa24.02■■□□□ 1.44
VPS28-208ENST00000527797 LDHDQ86WU2 507 aa24.02■■□□□ 1.44
VPS28-208ENST00000527797 MARCKSP29966 332 aaPredicted RBP24.02■■□□□ 1.44
VPS28-208ENST00000527797 JAKMIP3Q5VZ66 844 aa24.02■■□□□ 1.44
VPS28-208ENST00000527797 CCDC174Q6PII3 467 aa24.02■■□□□ 1.44
VPS28-208ENST00000527797 MOB2Q70IA6 237 aa24.02■■□□□ 1.44
VPS28-208ENST00000527797 SYAP1Q96A49 352 aaPredicted RBP24.02■■□□□ 1.44
VPS28-208ENST00000527797 ELP3Q9H9T3 547 aa24.02■■□□□ 1.44
VPS28-208ENST00000527797 FLOT1O75955 427 aa24.01■■□□□ 1.43
VPS28-208ENST00000527797 PPATQ06203 517 aa24.01■■□□□ 1.43
VPS28-208ENST00000527797 SH3D19Q5HYK7 790 aa24.01■■□□□ 1.43
VPS28-208ENST00000527797 TMEM260Q9NX78 707 aa24.01■■□□□ 1.43
VPS28-208ENST00000527797 A0A1W2PQ27 194 aa24■■□□□ 1.43
VPS28-208ENST00000527797 A0A1W2PQ64 194 aa24■■□□□ 1.43
VPS28-208ENST00000527797 A0A1W2PQD8 194 aa24■■□□□ 1.43
VPS28-208ENST00000527797 ZNF174Q15697 407 aa24■■□□□ 1.43
VPS28-208ENST00000527797 INF2Q27J81 1249 aa24■■□□□ 1.43
VPS28-208ENST00000527797 ERO1BQ86YB8 467 aa24■■□□□ 1.43
VPS28-208ENST00000527797 CCAR1Q8IX12 1150 aaKnown RBP24■■□□□ 1.43
VPS28-208ENST00000527797 PPP1R9AQ9ULJ8 1098 aa24■■□□□ 1.43
VPS28-208ENST00000527797 MORC2Q9Y6X9 1032 aaPredicted RBP24■■□□□ 1.43
VPS28-208ENST00000527797 TRAF5O00463 557 aa23.99■■□□□ 1.43
VPS28-208ENST00000527797 CLK2P49760 499 aaKnown RBP23.99■■□□□ 1.43
VPS28-208ENST00000527797 UBE2SQ16763 222 aa23.99■■□□□ 1.43
VPS28-208ENST00000527797 KRI1Q8N9T8 703 aaKnown RBP23.99■■□□□ 1.43
VPS28-208ENST00000527797 CLMNQ96JQ2 1002 aa23.99■■□□□ 1.43
VPS28-208ENST00000527797 ZNF408Q9H9D4 720 aa23.99■■□□□ 1.43
VPS28-208ENST00000527797 NMRK2Q9NPI5 230 aa23.99■■□□□ 1.43
VPS28-208ENST00000527797 TMEM63CQ9P1W3 806 aa23.99■■□□□ 1.43
VPS28-208ENST00000527797 SPDYE5A6NIY4 337 aa23.98■■□□□ 1.43
VPS28-208ENST00000527797 WNT7AO00755 349 aa23.98■■□□□ 1.43
VPS28-208ENST00000527797 CUTAO60888 179 aa23.98■■□□□ 1.43
VPS28-208ENST00000527797 FDX1P10109 184 aa23.98■■□□□ 1.43
VPS28-208ENST00000527797 LIG1P18858 919 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms