RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 PHC3Q8NDX5 983 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 CASKIN2Q8WXE0 1202 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 HPS3Q969F9 1004 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 FAM207AQ9NSI2 230 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 C2CD2Q9Y426 696 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 ATP7BP35670 1465 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 TRPM2O94759 1503 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 VWDEQ8N2E2 1590 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 CTNND1O60716 968 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 ATP5JP18859 108 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 COPB2P35606 906 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 RFC5P40937 340 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 METAP2P50579 478 aaKnown RBP eCLIP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 ALDH5A1P51649 535 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 IGBP1P78318 339 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 SKOR1P84550 965 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 ITGB3BPQ13352 177 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 CUL4BQ13620 913 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 TRIM29Q14134 588 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 EARS2Q5JPH6 523 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 UBAP2Q5T6F2 1119 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 UBE3BQ7Z3V4 1068 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 RALYLQ86SE5 291 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 MYLK4Q86YV6 388 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 TBC1D5Q92609 795 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 ATP6V1G3Q96LB4 118 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 DPH5Q9H2P9 285 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 NKX1-2Q9UD57 310 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 SUGT1Q9Y2Z0 365 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 GLI2P10070 1586 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 CAMSAP1Q5T5Y3 1602 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 F8W031 263 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 PSMD14O00487 310 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 MAP2P11137 1827 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 ETS2P15036 469 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 CTNNA1P35221 906 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 KIF5AQ12840 1032 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 TRAF1Q13077 416 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 DIS3L2Q8IYB7 885 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 IQCKQ8N0W5 287 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 CCDC155Q8N6L0 562 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 PALLDQ8WX93 1383 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 OSBPL9Q96SU4 736 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 MTRQ99707 1265 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 MYD88Q99836 296 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 SYT15Q9BQS2 421 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 UBE2OQ9C0C9 1292 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 NLRC4Q9NPP4 1024 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 EID1Q9Y6B2 187 aa8.04□□□□□ -1.12
LIMCH1-207ENST00000508466 ABCA8O94911 1581 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 GOLGA6L10A6NI86 522 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 PPP1R3GB7ZBB8 358 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 IGF2BP3O00425 579 aaKnown RBP eCLIP8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 KRT86O43790 486 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 MGRN1O60291 552 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 RANBP6O60518 1105 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 EPHB4P54760 987 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 EHHADHQ08426 723 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 TNNI3KQ59H18 835 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 GKAP1Q5VSY0 366 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 DNAJC14Q6Y2X3 702 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 KDM7AQ6ZMT4 941 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 C2CD5Q86YS7 1000 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 TRIM58Q8NG06 486 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 ANKRD24Q8TF21 1146 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 UCMAQ8WVF2 138 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 TEKT4Q8WW24 435 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 NELFBQ8WX92 580 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 PAGE5Q96GU1 130 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 METTL5Q9NRN9 209 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 DBF4Q9UBU7 674 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 PNMA2Q9UL42 364 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 FPGT-TNNI3KV9GXZ4 949 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 CPSF1Q10570 1443 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 GRM8O00222 908 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 PPFIA2O75334 1257 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 TRIM37O94972 964 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 KRT16P08779 473 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 MCM3P25205 808 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 PBX1P40424 430 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 ANKRD20A2Q5SQ80 823 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 ANKRD20A1Q5TYW2 823 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 ANKRD20A3Q5VUR7 823 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 PAPD7Q5XG87 772 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 RFX8Q6ZV50 586 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 TOM1L2Q6ZVM7 507 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 CYB5R4Q7L1T6 521 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 OTUD6AQ7L8S5 288 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 BRAPQ7Z569 592 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 ZNF274Q96GC6 653 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 RPS6KC1Q96S38 1066 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 NEUROG2Q9H2A3 272 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 PCMTD2Q9NV79 361 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 DLGAP2Q9P1A6 1054 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 ZNF232Q9UNY5 417 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 PCNTO95613 3336 aa8.03□□□□□ -1.12
LIMCH1-207ENST00000508466 DLG5Q8TDM6 1919 aa8.02□□□□□ -1.12
LIMCH1-207ENST00000508466 ADGRL3Q9HAR2 1447 aa8.02□□□□□ -1.12
LIMCH1-207ENST00000508466 BTBD11A6QL63 1104 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms