RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 PICK1Q9NRD5 415 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 BMP2KQ9NSY1 1161 aaPredicted RBP12.56□□□□□ -0.4
SVIP-201ENST00000354193 R3HCC1Q9Y3T6 440 aaKnown RBP12.56□□□□□ -0.4
SVIP-201ENST00000354193 WNT10BO00744 389 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 SPP2Q13103 211 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 TBC1D7Q9P0N9 293 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 BMP15O95972 392 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 ANGEL2Q5VTE6 544 aaKnown RBP12.56□□□□□ -0.4
SVIP-201ENST00000354193 MTA3Q9BTC8 594 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 BARHL2Q9NY43 387 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 LRWD1Q9UFC0 647 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 A0A1W2PQ27 194 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 A0A1W2PQ64 194 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 A0A1W2PQD8 194 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 TDP2O95551 362 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 CYP4A11Q02928 519 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 ZNF543Q08ER8 600 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 TNFAIP1Q13829 316 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 AXDND1Q5T1B0 1012 aaPredicted RBP12.56□□□□□ -0.4
SVIP-201ENST00000354193 FBXL16Q8N461 479 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 MKRN1Q9UHC7 482 aaKnown RBP12.56□□□□□ -0.4
SVIP-201ENST00000354193 NRBP1Q9UHY1 535 aa12.56□□□□□ -0.4
SVIP-201ENST00000354193 PTPREP23469 700 aa12.55□□□□□ -0.4
SVIP-201ENST00000354193 CHMP4BP1P59074 171 aa12.55□□□□□ -0.4
SVIP-201ENST00000354193 MKRN3Q13064 507 aaKnown RBP12.55□□□□□ -0.4
SVIP-201ENST00000354193 DGKZQ13574 1117 aa12.55□□□□□ -0.4
SVIP-201ENST00000354193 N4BP2Q86UW6 1770 aaPredicted RBP12.55□□□□□ -0.4
SVIP-201ENST00000354193 PRR29P0C7W0 189 aa12.55□□□□□ -0.4
SVIP-201ENST00000354193 SLC30A10Q6XR72 485 aa12.55□□□□□ -0.4
SVIP-201ENST00000354193 SNX29Q8TEQ0 813 aa12.55□□□□□ -0.4
SVIP-201ENST00000354193 WRNIP1Q96S55 665 aa12.55□□□□□ -0.4
SVIP-201ENST00000354193 TMEM60Q9H2L4 133 aa12.55□□□□□ -0.4
SVIP-201ENST00000354193 SMTNL1A8MU46 457 aa12.55□□□□□ -0.4
SVIP-201ENST00000354193 SNW1Q13573 536 aaKnown RBP12.55□□□□□ -0.4
SVIP-201ENST00000354193 RAB34Q9BZG1 259 aa12.55□□□□□ -0.4
SVIP-201ENST00000354193 POTEMA6NI47 508 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 PPP6R2O75170 966 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 TPM3P06753 285 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 MYCLP12524 364 aaPredicted RBP12.54□□□□□ -0.4
SVIP-201ENST00000354193 KRT79Q5XKE5 535 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 GLIS2Q9BZE0 524 aaPredicted RBP12.54□□□□□ -0.4
SVIP-201ENST00000354193 JMJD4Q9H9V9 463 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.54□□□□□ -0.4
SVIP-201ENST00000354193 PALM3A6NDB9 673 aaPredicted RBP12.54□□□□□ -0.4
SVIP-201ENST00000354193 DDNO94850 711 aaPredicted RBP12.54□□□□□ -0.4
SVIP-201ENST00000354193 UBASH3AP57075 661 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 CACNB1Q02641 598 aaPredicted RBP12.54□□□□□ -0.4
SVIP-201ENST00000354193 KIF4BQ2VIQ3 1234 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 NCAPH2Q6IBW4 605 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 MAEAQ7L5Y9 396 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 ANKRD20A12PQ8NF67 263 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 AMNQ9BXJ7 453 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 FHDC1Q9C0D6 1143 aaPredicted RBP12.54□□□□□ -0.4
SVIP-201ENST00000354193 DEFB129Q9H1M3 183 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 SH3BP5LQ7L8J4 393 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 ZKSCAN4Q969J2 545 aaPredicted RBP12.54□□□□□ -0.4
SVIP-201ENST00000354193 ANKRD36CQ5JPF3 1778 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 INPP5BP32019 993 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 STAT2P52630 851 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 CABP7Q86V35 215 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 POTEDQ86YR6 584 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 GOPCQ9HD26 462 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 PCDHA6Q9UN73 950 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 PCDHA8Q9Y5H6 950 aa12.54□□□□□ -0.4
SVIP-201ENST00000354193 SRPRBQ9Y5M8 271 aaKnown RBP12.54□□□□□ -0.4
SVIP-201ENST00000354193 PNMA6FA0A0J9YX94 578 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 STXBP3O00186 592 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 OR52Z1P0C646 297 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 LRMPQ12912 555 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 PTPAQ15257 358 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 NBPF12Q5TAG4 269 aaPredicted RBP12.53□□□□□ -0.4
SVIP-201ENST00000354193 FERMT2Q96AC1 680 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 GGA3Q9NZ52 723 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 NFE2L3Q9Y4A8 694 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 ZHX2Q9Y6X8 837 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 ZBTB5O15062 677 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 ATP1A3P13637 1013 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 CCT6AP40227 531 aaKnown RBP12.53□□□□□ -0.4
SVIP-201ENST00000354193 SYDE2Q5VT97 1194 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 TMX1Q9H3N1 280 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 HACL1Q9UJ83 578 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.53□□□□□ -0.4
SVIP-201ENST00000354193 MYO3BQ8WXR4 1341 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 UVSSAQ2YD98 709 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 DNAJC18Q9H819 358 aa12.53□□□□□ -0.4
SVIP-201ENST00000354193 FBXO2Q9UK22 296 aaPredicted RBP12.53□□□□□ -0.4
SVIP-201ENST00000354193 PPP4R3BQ5MIZ7 849 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 FAM151AQ8WW52 585 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 FANCLQ9NW38 375 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 DACH1Q9UI36 760 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 TGFB2P61812 414 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 FUT2Q10981 343 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 STIM1Q13586 685 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 KANK3Q6NY19 840 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 SULF1Q8IWU6 871 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 DDX25Q9UHL0 483 aaKnown RBP12.52□□□□□ -0.4
SVIP-201ENST00000354193 CCPG1Q9ULG6 757 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 PCDHA12Q9UN75 941 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 CTNND2Q9UQB3 1225 aa12.52□□□□□ -0.4
SVIP-201ENST00000354193 NHSQ6T4R5 1651 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms