RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CD8BP10966 210 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 FGFR1P11362 822 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 TEKQ02763 1124 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 LRP8Q14114 963 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 TMEM67Q5HYA8 995 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 ZMYM1Q5SVZ6 1142 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 RCSD1Q6JBY9 416 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 JAZF1Q86VZ6 243 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 AGBL5Q8NDL9 886 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 FLCNQ8NFG4 579 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 SH3TC2Q8TF17 1288 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 BTN2A2Q8WVV5 523 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 RNPC3Q96LT9 517 aaKnown RBP4.99□□□□□ -1.61
HMGB1-201ENST00000326004 IPO9Q96P70 1041 aaKnown RBP4.99□□□□□ -1.61
HMGB1-201ENST00000326004 SLC12A9Q9BXP2 914 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 ARHGEF4Q9NR80 690 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 PCMTD2Q9NV79 361 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 GPR55Q9Y2T6 319 aaPredicted RBP4.99□□□□□ -1.61
HMGB1-201ENST00000326004 BACE2Q9Y5Z0 518 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 MRPL42Q9Y6G3 142 aaKnown RBP4.99□□□□□ -1.61
HMGB1-201ENST00000326004 TBX1O43435 398 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 WNT11O96014 354 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 SCG5P05408 212 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 FAM153BP0C7A2 387 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 RBM10P98175 930 aaKnown RBP4.98□□□□□ -1.61
HMGB1-201ENST00000326004 ZP2Q05996 745 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 DPY19L1Q2PZI1 675 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 EEF1DP3Q658K8 133 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 SPRED2Q7Z698 418 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 WFDC3Q8IUB2 231 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 KCTD13Q8WZ19 329 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 CCDC120Q96HB5 630 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 FCRL3Q96P31 734 aaPredicted RBP4.98□□□□□ -1.61
HMGB1-201ENST00000326004 CDC6Q99741 560 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 LGR4Q9BXB1 951 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 CARS2Q9HA77 564 aaKnown RBP4.98□□□□□ -1.61
HMGB1-201ENST00000326004 TMEM260Q9NX78 707 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 ZNF281Q9Y2X9 895 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 PTCH2Q9Y6C5 1203 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 SHROOM4Q9ULL8 1493 aa4.98□□□□□ -1.61
HMGB1-201ENST00000326004 TRBV23OR9-2A0A075B6M9 112 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 C2orf71A6NGG8 1288 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 STXBP3O00186 592 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 ENPP3O14638 875 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 SNRPB2P08579 225 aaKnown RBP4.97□□□□□ -1.61
HMGB1-201ENST00000326004 GSTM1P09488 218 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 IFNGR1P15260 489 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 FUT4P22083 530 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 RPL10P27635 214 aaKnown RBP4.97□□□□□ -1.61
HMGB1-201ENST00000326004 CD96P40200 585 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 GRIA2P42262 883 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 SEPHS1P49903 392 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 GFRA1P56159 465 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 MAP4K2Q12851 820 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 DUSP4Q13115 394 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 RTP2Q5QGT7 225 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 CYP2R1Q6VVX0 501 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 NSMFQ6X4W1 530 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 ZNF574Q6ZN55 896 aaPredicted RBP4.97□□□□□ -1.61
HMGB1-201ENST00000326004 HOMER1Q86YM7 354 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 KSR1Q8IVT5 923 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 SCUBE1Q8IWY4 988 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 SYNPOQ8N3V7 929 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 COPS5Q92905 334 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 FCRL2Q96LA5 508 aaPredicted RBP4.97□□□□□ -1.61
HMGB1-201ENST00000326004 ALPK1Q96QP1 1244 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 MCMBPQ9BTE3 642 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 IER2Q9BTL4 223 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 CDADC1Q9BWV3 514 aa4.97□□□□□ -1.61
HMGB1-201ENST00000326004 PAK6Q9NQU5 681 aaPredicted RBP4.97□□□□□ -1.61
HMGB1-201ENST00000326004 DNAJC25-GNG10A0A024R161 153 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 TRBV23-1A0A0A0MS06 115 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 TMEM82A0PJX8 343 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 FGF10O15520 208 aaPredicted RBP4.96□□□□□ -1.62
HMGB1-201ENST00000326004 PRODHO43272 600 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 FKTNO75072 461 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 PABPC1P11940 636 aaKnown RBP4.96□□□□□ -1.62
HMGB1-201ENST00000326004 KCNJ6P48051 423 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 SUMO1P63165 101 aaKnown RBP4.96□□□□□ -1.62
HMGB1-201ENST00000326004 SCRN1Q12765 414 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 SQSTM1Q13501 440 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 SDE2Q6IQ49 451 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 SLC23A3Q6PIS1 610 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 NFXL1Q6ZNB6 911 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 WAPLQ7Z5K2 1190 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 APPBP2Q92624 585 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 DHRS4Q9BTZ2 278 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 AP5S1Q9NUS5 200 aa4.96□□□□□ -1.62
HMGB1-201ENST00000326004 CADPSQ9ULU8 1353 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 HYAL3O43820 417 aaPredicted RBP4.95□□□□□ -1.62
HMGB1-201ENST00000326004 SMARCA5O60264 1052 aaPredicted RBP4.95□□□□□ -1.62
HMGB1-201ENST00000326004 DLX3O60479 287 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 CDC45O75419 566 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 TBC1D8O95759 1140 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 THBDP07204 575 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 PAMP19021 973 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 HSD3B2P26439 372 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 ECI1P42126 302 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 SLC35F1Q5T1Q4 408 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 ACBD5Q5T8D3 534 aaPredicted RBP4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms