RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 NUCKS1Q9H1E3 243 aaKnown RBP12.61□□□□□ -0.39
USP53-201ENST00000274030 ZBTB1Q9Y2K1 713 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 I3L4J1 428 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 ADCY8P40145 1251 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 ATP1A2P50993 1020 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 CACNB1Q02641 598 aaPredicted RBP12.61□□□□□ -0.39
USP53-201ENST00000274030 ARMCX5Q6P1M9 558 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 BCL2L12Q9HB09 334 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 KIAA1024Q9UPX6 916 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 WDR62O43379 1518 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 KRT81Q14533 505 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 KAZNQ674X7 775 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 PALM2Q8IXS6 379 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 MRPL11Q9Y3B7 192 aaKnown RBP12.6□□□□□ -0.39
USP53-201ENST00000274030 MAP3K15Q6ZN16 1313 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 RGS16O15492 202 aaPredicted RBP12.6□□□□□ -0.39
USP53-201ENST00000274030 LGSNQ5TDP6 509 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 KCTD1Q719H9 257 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 FTOQ9C0B1 505 aaKnown RBP eCLIP12.6□□□□□ -0.39
USP53-201ENST00000274030 CAPN9O14815 690 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 SLC12A2P55011 1212 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 TNFAIP1Q13829 316 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 LLGL1Q15334 1064 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 TRIM58Q8NG06 486 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 LSG1Q9H089 658 aaKnown RBP12.6□□□□□ -0.39
USP53-201ENST00000274030 CCPG1Q9ULG6 757 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 CYP21A2P08686 494 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 SLC16A2P36021 539 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 PPFIA1Q13136 1202 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 FAM26FQ5R3K3 315 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 ARHGAP27Q6ZUM4 889 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 C1orf112Q9NSG2 853 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 SEPT10Q9P0V9 454 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 PCDHA5Q9Y5H7 936 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 TXNDC9O14530 226 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 P4HA1P13674 534 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 PABPC4Q13310 644 aaKnown RBP eCLIP12.6□□□□□ -0.39
USP53-201ENST00000274030 FBXO18Q8NFZ0 1043 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 KRT12Q99456 494 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 STK38LQ9Y2H1 464 aa12.6□□□□□ -0.39
USP53-201ENST00000274030 M0R2C6 588 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 PRKAB2O43741 272 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 BUB1BO60566 1050 aaPredicted RBP12.59□□□□□ -0.39
USP53-201ENST00000274030 CDC25AP30304 524 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 STX2P32856 288 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 ABCB5Q2M3G0 1257 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 ANKRD20A3Q5VUR7 823 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 ZBTB8OSQ8IWT0 167 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP53-201ENST00000274030 APOL6Q9BWW8 343 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 RAB17Q9H0T7 212 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 NRBP1Q9UHY1 535 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 ZNF215Q9UL58 517 aaPredicted RBP12.59□□□□□ -0.39
USP53-201ENST00000274030 GTPBP6O43824 516 aaPredicted RBP12.59□□□□□ -0.39
USP53-201ENST00000274030 LRRC41Q15345 812 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 GRAMD1CQ8IYS0 662 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 RAB20Q9NX57 234 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 MED23Q9ULK4 1368 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 SAT1P21673 171 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 GPR162Q16538 588 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 IWS1Q96ST2 819 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 TEKT3Q9BXF9 490 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 AS3MTQ9HBK9 375 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 TMCO4Q5TGY1 634 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 SLFN12Q8IYM2 578 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 LARSQ9P2J5 1176 aaKnown RBP12.59□□□□□ -0.39
USP53-201ENST00000274030 SHANK2Q9UPX8 1470 aa12.59□□□□□ -0.39
USP53-201ENST00000274030 POLGP54098 1239 aaPredicted RBP12.58□□□□□ -0.39
USP53-201ENST00000274030 ODR4Q5SWX8 454 aa12.58□□□□□ -0.39
USP53-201ENST00000274030 LRRC8AQ8IWT6 810 aa12.58□□□□□ -0.39
USP53-201ENST00000274030 CACNA2D3Q8IZS8 1091 aa12.58□□□□□ -0.39
USP53-201ENST00000274030 GABPB2Q8TAK5 448 aaPredicted RBP12.58□□□□□ -0.39
USP53-201ENST00000274030 GSDMBQ8TAX9 411 aa12.58□□□□□ -0.39
USP53-201ENST00000274030 CCDC51Q96ER9 411 aa12.58□□□□□ -0.39
USP53-201ENST00000274030 ENC1O14682 589 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 MTMR3Q13615 1198 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 MAP4K1Q92918 833 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 TMEM2Q9UHN6 1383 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 BAG6P46379 1132 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 EHHADHQ08426 723 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 ITKQ08881 620 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 SPATA1Q5VX52 437 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 EP400NLQ6ZTU2 488 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 POMGNT1Q8WZA1 660 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 DBNDD1Q9H9R9 158 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 HYOU1Q9Y4L1 999 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 COL4A3BPQ9Y5P4 624 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 MAST1Q9Y2H9 1570 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 GDF11O95390 407 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 RASSF7Q02833 373 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 GAS2L3Q86XJ1 694 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 TRIM50Q86XT4 487 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 COPRSQ9NQ92 184 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 ATP10AO60312 1499 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 STAM2O75886 525 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 TNNC2P02585 160 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 TMEM191BP0C7N4 346 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 CASP14P31944 242 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 PDE6CP51160 858 aa12.58□□□□□ -0.4
USP53-201ENST00000274030 CD2BP2O95400 341 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms