RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 PRDM2Q13029 1718 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 NUDT19A8MXV4 375 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 C1QTNF3-AMACRE9PGA6 284 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 CYP4F8P98187 520 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 ATP2B2Q01814 1243 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 NMIQ13287 307 aaPredicted RBP3.81□□□□□ -1.8
SPG11-223ENST00000560858 CCDC85BQ15834 202 aaPredicted RBP3.81□□□□□ -1.8
SPG11-223ENST00000560858 AGMOQ6ZNB7 445 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 SLFN12Q8IYM2 578 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 CCDC82Q8N4S0 544 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 DAGLBQ8NCG7 672 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 LINC00116Q8NCU8 138 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 CCDC74BQ96LY2 380 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 PLCD4Q9BRC7 762 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 MENTQ9BUN1 341 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 FOXP3Q9BZS1 431 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 BIN2Q9UBW5 565 aaPredicted RBP3.81□□□□□ -1.8
SPG11-223ENST00000560858 SUSD2Q9UGT4 822 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 BIVM-ERCC5R4GMW8 1640 aa3.81□□□□□ -1.8
SPG11-223ENST00000560858 IRS2Q9Y4H2 1338 aa3.8□□□□□ -1.8
SPG11-223ENST00000560858 TMEM82A0PJX8 343 aa3.8□□□□□ -1.8
SPG11-223ENST00000560858 ITGB3P05106 788 aa3.8□□□□□ -1.8
SPG11-223ENST00000560858 CBX2Q14781 532 aaPredicted RBP3.8□□□□□ -1.8
SPG11-223ENST00000560858 TMEM201Q5SNT2 666 aa3.8□□□□□ -1.8
SPG11-223ENST00000560858 LSRQ86X29 649 aaPredicted RBP3.8□□□□□ -1.8
SPG11-223ENST00000560858 JARID2Q92833 1246 aaPredicted RBP3.8□□□□□ -1.8
SPG11-223ENST00000560858 TCTN2Q96GX1 697 aa3.8□□□□□ -1.8
SPG11-223ENST00000560858 MRIQ9BWK5 157 aa3.8□□□□□ -1.8
SPG11-223ENST00000560858 SYNJ1O43426 1573 aa3.8□□□□□ -1.8
SPG11-223ENST00000560858 CEP162Q5TB80 1403 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 FKTNO75072 461 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 PRKCAP17252 672 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 ENDOUP21128 410 aaKnown RBP3.79□□□□□ -1.8
SPG11-223ENST00000560858 IGFBP6P24592 240 aaPredicted RBP3.79□□□□□ -1.8
SPG11-223ENST00000560858 MAPK1P28482 360 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 CNR2P34972 360 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 LIMS1P48059 325 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 NR1I3Q14994 352 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 ZC3H14Q6PJT7 736 aaKnown RBP3.79□□□□□ -1.8
SPG11-223ENST00000560858 LIPIQ6XZB0 460 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 DDX1Q92499 740 aaKnown RBP3.79□□□□□ -1.8
SPG11-223ENST00000560858 FCRL2Q96LA5 508 aaPredicted RBP3.79□□□□□ -1.8
SPG11-223ENST00000560858 FRMD6Q96NE9 622 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 SPATA25Q9BR10 227 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 C1QTNF3Q9BXJ4 246 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 HDAC8Q9BY41 377 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 SLITRK6Q9H5Y7 841 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 CORINQ9Y5Q5 1042 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 GOLGA3Q08378 1498 aa3.79□□□□□ -1.8
SPG11-223ENST00000560858 BAZ1BQ9UIG0 1483 aaKnown RBP3.79□□□□□ -1.8
SPG11-223ENST00000560858 TNIKQ9UKE5 1360 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 A0A1W2PQ27 194 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 A0A1W2PQ45 241 aaPredicted RBP3.78□□□□□ -1.8
SPG11-223ENST00000560858 A0A1W2PQ64 194 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 A0A1W2PQC6 194 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 A0A1W2PQD8 194 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 A0A1W2PQY0 241 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 SOWAHDA6NJG2 315 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 FADS2P1A8MWK0 482 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 BPNT1O95861 308 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 SYPP08247 313 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 MSL3P1P0C860 447 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 RLBP1P12271 317 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 GBP1P32455 592 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 MAPKAPK2P49137 400 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 LIG3P49916 1009 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 GJA9P57773 515 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 FOXO4P98177 505 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 HSF5Q4G112 596 aaPredicted RBP3.78□□□□□ -1.8
SPG11-223ENST00000560858 USP51Q70EK9 711 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 PHACTR4Q8IZ21 702 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 FNIP1Q8TF40 1166 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 EAF1Q96JC9 268 aaPredicted RBP3.78□□□□□ -1.8
SPG11-223ENST00000560858 SAMD11Q96NU1 681 aa3.78□□□□□ -1.8
SPG11-223ENST00000560858 TOP2BQ02880 1626 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 CYR61O00622 381 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 NOBOXO60393 691 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 C6P13671 934 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 RNF4P78317 190 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 ZNF200P98182 395 aaPredicted RBP3.77□□□□□ -1.81
SPG11-223ENST00000560858 MAP3K11Q16584 847 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 RPTNQ6XPR3 784 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 ZSCAN29Q8IWY8 852 aaPredicted RBP3.77□□□□□ -1.81
SPG11-223ENST00000560858 ADGRG2Q8IZP9 1017 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 TTC9BQ8N6N2 239 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 CHST13Q8NET6 341 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 NUP43Q8NFH3 380 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 LOXL4Q96JB6 756 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 FAN1Q9Y2M0 1017 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 DUSP10Q9Y6W6 482 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 PMF1-BGLAPU3KQ54 211 aa3.77□□□□□ -1.81
SPG11-223ENST00000560858 HMGXB3Q12766 1538 aa3.76□□□□□ -1.81
SPG11-223ENST00000560858 CEP164Q9UPV0 1460 aa3.76□□□□□ -1.81
SPG11-223ENST00000560858 A0A1B0GTL3 188 aa3.76□□□□□ -1.81
SPG11-223ENST00000560858 SH3D21A4FU49 640 aa3.76□□□□□ -1.81
SPG11-223ENST00000560858 ZNF20P17024 532 aa3.76□□□□□ -1.81
SPG11-223ENST00000560858 TACR2P21452 398 aa3.76□□□□□ -1.81
SPG11-223ENST00000560858 EIF4BP23588 611 aaKnown RBP3.76□□□□□ -1.81
SPG11-223ENST00000560858 KIR3DS1Q14943 382 aa3.76□□□□□ -1.81
SPG11-223ENST00000560858 PLEKHN1Q494U1 663 aaPredicted RBP3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms