RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 SOX18P35713 384 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 XKR5Q6UX68 686 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 ATG9AQ7Z3C6 839 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 ZNF438Q7Z4V0 828 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 CEP120Q8N960 986 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 JARID2Q92833 1246 aaPredicted RBP6.71□□□□□ -1.34
VPS41-211ENST00000466017 LNPKQ9C0E8 428 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 TUT1Q9H6E5 874 aaKnown RBP6.71□□□□□ -1.34
VPS41-211ENST00000466017 FRRS1LQ9P0K9 344 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 SALL4Q9UJQ4 1053 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 EXOC6BQ9Y2D4 811 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 RIPOR2Q9Y4F9 1068 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 TTC41PQ6P2S7 1318 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 PNPLA7Q6ZV29 1317 aa6.71□□□□□ -1.34
VPS41-211ENST00000466017 COL24A1Q17RW2 1714 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 POLRMTO00411 1230 aaKnown RBP6.7□□□□□ -1.34
VPS41-211ENST00000466017 MSTNO14793 375 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 TM4SF5O14894 197 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 FAM13AO94988 1023 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 KIF4AO95239 1232 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 PDE1AP54750 535 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 BMP2KLQ5H9B9 411 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 TTC39BQ5VTQ0 682 aaPredicted RBP6.7□□□□□ -1.34
VPS41-211ENST00000466017 TXNDC11Q6PKC3 985 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 NBPF5PQ86XG9 351 aaPredicted RBP6.7□□□□□ -1.34
VPS41-211ENST00000466017 SYNE4Q8N205 404 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 TTC9Q92623 222 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 CDC5LQ99459 802 aaKnown RBP6.7□□□□□ -1.34
VPS41-211ENST00000466017 GREM2Q9H772 168 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 LATS2Q9NRM7 1088 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 PA2G4Q9UQ80 394 aaKnown RBP6.7□□□□□ -1.34
VPS41-211ENST00000466017 AKAP2Q9Y2D5 859 aa6.7□□□□□ -1.34
VPS41-211ENST00000466017 TNFRSF21O75509 655 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 POLR3DP05423 398 aaPredicted RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 SPATA31C1P0DKV0 1188 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 HCLS1P14317 486 aaPredicted RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 ITGB7P26010 798 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 CDC25BP30305 580 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 HOXA10P31260 410 aaPredicted RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 CRY2Q49AN0 593 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 PDE12Q6L8Q7 609 aaKnown RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 PRR5LQ6MZQ0 368 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 LDHAL6AQ6ZMR3 332 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 SMIM5Q71RC9 77 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 DEFB132Q7Z7B7 95 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 C16orf71Q8IYS4 520 aaPredicted RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 FMR1NBQ8N0W7 255 aaPredicted RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 IL22RA1Q8N6P7 574 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.69□□□□□ -1.34
VPS41-211ENST00000466017 EAF2Q96CJ1 260 aaPredicted RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 ZNF512BQ96KM6 892 aaPredicted RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 POP1Q99575 1024 aaKnown RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 BRIP1Q9BX63 1249 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 LACRTQ9GZZ8 138 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 SH2B1Q9NRF2 756 aaPredicted RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 BSDC1Q9NW68 430 aaPredicted RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 FAM13BQ9NYF5 915 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 NOP53Q9NZM5 478 aaKnown RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 FNDC3AQ9Y2H6 1198 aaKnown RBP6.69□□□□□ -1.34
VPS41-211ENST00000466017 MYH3P11055 1940 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 C4AP0C0L4 1744 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 MROH5Q6ZUA9 1318 aa6.69□□□□□ -1.34
VPS41-211ENST00000466017 NRXN2Q9P2S2 1712 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 LAMB2P55268 1798 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 ERC2O15083 957 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 SMARCA5O60264 1052 aaPredicted RBP6.68□□□□□ -1.34
VPS41-211ENST00000466017 IGSF3O75054 1194 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 BBOX1O75936 387 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 GLRX3O76003 335 aaKnown RBP6.68□□□□□ -1.34
VPS41-211ENST00000466017 PDE8BO95263 885 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 IGHA2P01877 340 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 FURINP09958 794 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 MX1P20591 662 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 FGFR2P21802 821 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 IGHMBP2P38935 993 aaKnown RBP6.68□□□□□ -1.34
VPS41-211ENST00000466017 RGS3P49796 1198 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 RPS8P62241 208 aaKnown RBP6.68□□□□□ -1.34
VPS41-211ENST00000466017 ST5P78524 1137 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 OS9Q13438 667 aaPredicted RBP6.68□□□□□ -1.34
VPS41-211ENST00000466017 DOC2BQ14184 412 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 LRRC24Q50LG9 513 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 TNNI3KQ59H18 835 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 TTC22Q5TAA0 569 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 HGSNATQ68CP4 663 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 TMC4Q7Z404 712 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 GJD3Q8N144 294 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 VGLL2Q8N8G2 317 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 CNBD1Q8NA66 436 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 GALNT11Q8NCW6 608 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 CRAMP1Q96RY5 1269 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 BACH2Q9BYV9 841 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 FPGT-TNNI3KV9GXZ4 949 aa6.68□□□□□ -1.34
VPS41-211ENST00000466017 DDX60Q8IY21 1712 aaKnown RBP6.67□□□□□ -1.34
VPS41-211ENST00000466017 EPB41L2O43491 1005 aaKnown RBP6.67□□□□□ -1.34
VPS41-211ENST00000466017 GHRHP01286 108 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 IFIT2P09913 472 aaKnown RBP6.67□□□□□ -1.34
VPS41-211ENST00000466017 ATP5JP18859 108 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 DDR1Q08345 913 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 TFCP2Q12800 502 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 HYAL2Q12891 473 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms