RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PRKAB1Q9Y478 270 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 DNAJC25-GNG10A0A024R161 153 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 CTSHP09668 335 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 ATF4P18848 351 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-204ENST00000399489 AMPD3Q01432 767 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 EGR3Q06889 387 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 VPS37DQ86XT2 251 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 FMNL3Q8IVF7 1028 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 CKAP2LQ8IYA6 745 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 LRRC56Q8IYG6 542 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-204ENST00000399489 LILRA2Q8N149 483 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 PHC3Q8NDX5 983 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 RNF141Q8WVD5 230 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 JDP2Q8WYK2 163 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 ASCC2Q9H1I8 757 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-204ENST00000399489 TERF2IPQ9NYB0 399 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 TLR6Q9Y2C9 796 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 HPXP02790 462 aa5.47□□□□□ -1.53
HMGB1-204ENST00000399489 CAMK2GQ13555 558 aaPredicted RBP5.47□□□□□ -1.53
HMGB1-204ENST00000399489 CLEC16AQ2KHT3 1053 aa5.47□□□□□ -1.53
HMGB1-204ENST00000399489 RALGPS1Q5JS13 557 aa5.47□□□□□ -1.53
HMGB1-204ENST00000399489 TMEM201Q5SNT2 666 aa5.47□□□□□ -1.53
HMGB1-204ENST00000399489 TSPYL5Q86VY4 417 aaPredicted RBP5.47□□□□□ -1.53
HMGB1-204ENST00000399489 SPPL2CQ8IUH8 684 aa5.47□□□□□ -1.53
HMGB1-204ENST00000399489 SIAH1Q8IUQ4 282 aa5.47□□□□□ -1.53
HMGB1-204ENST00000399489 PDZD8Q8NEN9 1154 aa5.47□□□□□ -1.53
HMGB1-204ENST00000399489 Q96M66 194 aa5.47□□□□□ -1.53
HMGB1-204ENST00000399489 DUSP15Q9H1R2 295 aaPredicted RBP5.47□□□□□ -1.53
HMGB1-204ENST00000399489 USP31Q70CQ4 1352 aa5.47□□□□□ -1.53
HMGB1-204ENST00000399489 PDGFRBP09619 1106 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 C1QTNF9P0C862 333 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 CFPP27918 469 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 GBP2P32456 591 aaPredicted RBP5.46□□□□□ -1.54
HMGB1-204ENST00000399489 RHBDL3P58872 404 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 SETQ01105 290 aaPredicted RBP5.46□□□□□ -1.54
HMGB1-204ENST00000399489 C4orf46Q504U0 113 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 SNAP47Q5SQN1 464 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 TSHZ1Q6ZSZ6 1077 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 DTWD2Q8NBA8 298 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 GATAD2BQ8WXI9 593 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 ASPNQ9BXN1 380 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 SLC6A17Q9H1V8 727 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 ADAMTS10Q9H324 1103 aa5.46□□□□□ -1.54
HMGB1-204ENST00000399489 TYW1Q9NV66 732 aaKnown RBP5.46□□□□□ -1.54
HMGB1-204ENST00000399489 FITM1A5D6W6 292 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 CILPO75339 1184 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 DUSP4Q13115 394 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 GAB4Q2WGN9 574 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 PHACTR4Q8IZ21 702 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 MKL1Q969V6 931 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 CCDC74BQ96LY2 380 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 KLHL3Q9UH77 587 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 CORINQ9Y5Q5 1042 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 UPK3BL1B0FP48 263 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 HMGB1P1B2RPK0 211 aaPredicted RBP5.45□□□□□ -1.54
HMGB1-204ENST00000399489 UPK3BL2E5RIL1 263 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 PRC1O43663 620 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 PF4P02776 101 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 PAX3P23760 479 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 CHRNEQ04844 493 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 ODR4Q5SWX8 454 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 CIAPIN1Q6FI81 312 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 BNC2Q6ZN30 1099 aaPredicted RBP5.45□□□□□ -1.54
HMGB1-204ENST00000399489 SLFN12Q8IYM2 578 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 NME8Q8N427 588 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 KCNN1Q92952 543 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 RSRP1Q9BUV0 290 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 TMX1Q9H3N1 280 aa5.45□□□□□ -1.54
HMGB1-204ENST00000399489 LAS1LQ9Y4W2 734 aaKnown RBP5.45□□□□□ -1.54
HMGB1-204ENST00000399489 NPIPB6E9PJ23 425 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 PPP1R12AO14974 1030 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-204ENST00000399489 SRFP11831 508 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 GBP1P32455 592 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 ERVFC1P60507 584 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 BIRC2Q13490 618 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 TTLL10Q6ZVT0 673 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 HS2ST1Q7LGA3 356 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 IRF2BP1Q8IU81 584 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 PPP1R13LQ8WUF5 828 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 TMEM74Q96NL1 305 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 RPS6KC1Q96S38 1066 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 REV1Q9UBZ9 1251 aa5.44□□□□□ -1.54
HMGB1-204ENST00000399489 A0A0U1RQG5 324 aaPredicted RBP5.43□□□□□ -1.54
HMGB1-204ENST00000399489 F13A1P00488 732 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 ZSCAN22P10073 491 aaPredicted RBP5.43□□□□□ -1.54
HMGB1-204ENST00000399489 RNF4P78317 190 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 FAM50AQ14320 339 aaKnown RBP5.43□□□□□ -1.54
HMGB1-204ENST00000399489 ATG14Q6ZNE5 492 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 GPRASP2Q96D09 838 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 KREMEN1Q96MU8 473 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 SRPK1Q96SB4 655 aaKnown RBP5.43□□□□□ -1.54
HMGB1-204ENST00000399489 MAF1Q9H063 256 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 PCDHA11Q9Y5I1 949 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 SSU72P8A0A1W2PR75 194 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 FAM221AA4D161 298 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 WASH4PA8MWX3 477 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 SH3BP5O60239 455 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 CDC45O75419 566 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 ZGLP1P0C6A0 271 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 GLDCP23378 1020 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms