RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 USP17L22D6RA61 530 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 USP17L17D6RBQ6 530 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 USP17L19D6RCP7 530 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 USP17L20D6RJB6 530 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 IGF2BP3O00425 579 aaKnown RBP eCLIP29.51■■■□□ 2.32
SSBP3-202ENST00000357475 FLOT1O75955 427 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 HSPA6P17066 643 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 ANP32AP39687 249 aaKnown RBP29.51■■■□□ 2.32
SSBP3-202ENST00000357475 SLC4A3P48751 1232 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 STAT2P52630 851 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 USP17L24Q0WX57 530 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 BTNL9Q6UXG8 535 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 KIFC2Q96AC6 838 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 VAT1LQ9HCJ6 419 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 FEM1BQ9UK73 627 aa29.51■■■□□ 2.32
SSBP3-202ENST00000357475 MANSC4A6NHS7 340 aaPredicted RBP29.5■■■□□ 2.31
SSBP3-202ENST00000357475 JAK2O60674 1132 aa29.5■■■□□ 2.31
SSBP3-202ENST00000357475 VEGFBP49765 207 aa29.5■■■□□ 2.31
SSBP3-202ENST00000357475 CUL4AQ13619 759 aa29.5■■■□□ 2.31
SSBP3-202ENST00000357475 ADGRF4Q8IZF3 695 aa29.5■■■□□ 2.31
SSBP3-202ENST00000357475 FOXD4L1Q9NU39 408 aa29.5■■■□□ 2.31
SSBP3-202ENST00000357475 PRR12Q9ULL5 1215 aa29.5■■■□□ 2.31
SSBP3-202ENST00000357475 CCDC196A0A1B0GTZ2 297 aa29.5■■■□□ 2.31
SSBP3-202ENST00000357475 HOXA7P31268 230 aaPredicted RBP29.5■■■□□ 2.31
SSBP3-202ENST00000357475 PPP2R5BQ15173 497 aa29.5■■■□□ 2.31
SSBP3-202ENST00000357475 SYDE2Q5VT97 1194 aa29.5■■■□□ 2.31
SSBP3-202ENST00000357475 POTEEQ6S8J3 1075 aa29.5■■■□□ 2.31
SSBP3-202ENST00000357475 NSUN7Q8NE18 718 aaKnown RBP29.5■■■□□ 2.31
SSBP3-202ENST00000357475 JMJD4Q9H9V9 463 aa29.5■■■□□ 2.31
SSBP3-202ENST00000357475 PCNTO95613 3336 aa29.49■■■□□ 2.31
SSBP3-202ENST00000357475 CPLX1O14810 134 aa29.49■■■□□ 2.31
SSBP3-202ENST00000357475 GNAQP50148 359 aa29.49■■■□□ 2.31
SSBP3-202ENST00000357475 SLF1Q9BQI6 1058 aa29.49■■■□□ 2.31
SSBP3-202ENST00000357475 ASCC2Q9H1I8 757 aaPredicted RBP29.49■■■□□ 2.31
SSBP3-202ENST00000357475 RIOX1Q9H6W3 641 aa29.49■■■□□ 2.31
SSBP3-202ENST00000357475 WDR33Q9C0J8 1336 aaKnown RBP29.49■■■□□ 2.31
SSBP3-202ENST00000357475 PDHXO00330 501 aa29.48■■■□□ 2.31
SSBP3-202ENST00000357475 IFNAR1P17181 557 aa29.48■■■□□ 2.31
SSBP3-202ENST00000357475 ANKRD23Q86SG2 305 aa29.48■■■□□ 2.31
SSBP3-202ENST00000357475 ATG4CQ96DT6 458 aa29.48■■■□□ 2.31
SSBP3-202ENST00000357475 P2RX7Q99572 595 aaKnown RBP29.48■■■□□ 2.31
SSBP3-202ENST00000357475 SPZ1Q9BXG8 430 aa29.48■■■□□ 2.31
SSBP3-202ENST00000357475 PPP1R9AQ9ULJ8 1098 aa29.48■■■□□ 2.31
SSBP3-202ENST00000357475 DHX16O60231 1041 aaKnown RBP29.47■■■□□ 2.31
SSBP3-202ENST00000357475 PEX10O60683 326 aa29.47■■■□□ 2.31
SSBP3-202ENST00000357475 PLA2G6O60733 806 aa29.47■■■□□ 2.31
SSBP3-202ENST00000357475 NOGQ13253 232 aa29.47■■■□□ 2.31
SSBP3-202ENST00000357475 SPRYD3Q8NCJ5 442 aa29.47■■■□□ 2.31
SSBP3-202ENST00000357475 CHURC1Q8WUH1 139 aa29.47■■■□□ 2.31
SSBP3-202ENST00000357475 A0A0G2JMZ2 1700 aa29.47■■■□□ 2.31
SSBP3-202ENST00000357475 SMCHD1A6NHR9 2005 aa29.47■■■□□ 2.31
SSBP3-202ENST00000357475 PTPDC1A2A3K4 754 aa29.46■■■□□ 2.31
SSBP3-202ENST00000357475 CYP2C8P10632 490 aa29.46■■■□□ 2.31
SSBP3-202ENST00000357475 TAL1P17542 331 aaPredicted RBP29.46■■■□□ 2.31
SSBP3-202ENST00000357475 FAM160B2Q86V87 743 aa29.46■■■□□ 2.31
SSBP3-202ENST00000357475 DDX11Q96FC9 970 aa29.46■■■□□ 2.31
SSBP3-202ENST00000357475 PIGSQ96S52 555 aa29.46■■■□□ 2.31
SSBP3-202ENST00000357475 LZTS2Q9BRK4 669 aa29.46■■■□□ 2.31
SSBP3-202ENST00000357475 SLC26A6Q9BXS9 759 aa29.46■■■□□ 2.31
SSBP3-202ENST00000357475 SPDYE16A6NNV3 312 aaPredicted RBP29.45■■■□□ 2.31
SSBP3-202ENST00000357475 DSG3P32926 999 aa29.45■■■□□ 2.31
SSBP3-202ENST00000357475 COG2Q14746 738 aa29.45■■■□□ 2.31
SSBP3-202ENST00000357475 HOMER1Q86YM7 354 aa29.45■■■□□ 2.31
SSBP3-202ENST00000357475 IFNL1Q8IU54 200 aa29.45■■■□□ 2.31
SSBP3-202ENST00000357475 PRPF38AQ8NAV1 312 aaKnown RBP29.45■■■□□ 2.31
SSBP3-202ENST00000357475 V9GY48 417 aaPredicted RBP29.45■■■□□ 2.31
SSBP3-202ENST00000357475 THSD7BQ9C0I4 1608 aa29.45■■■□□ 2.31
SSBP3-202ENST00000357475 FDPSP14324 419 aaKnown RBP29.45■■■□□ 2.3
SSBP3-202ENST00000357475 IRX3P78415 501 aaPredicted RBP29.45■■■□□ 2.3
SSBP3-202ENST00000357475 SMARCC2Q8TAQ2 1214 aa29.45■■■□□ 2.3
SSBP3-202ENST00000357475 MTMR8Q96EF0 704 aa29.45■■■□□ 2.3
SSBP3-202ENST00000357475 CEP350Q5VT06 3117 aa29.45■■■□□ 2.3
SSBP3-202ENST00000357475 FMNL1O95466 1100 aaPredicted RBP29.44■■■□□ 2.3
SSBP3-202ENST00000357475 TM4SF4P48230 202 aa29.44■■■□□ 2.3
SSBP3-202ENST00000357475 BECN1Q14457 450 aa29.44■■■□□ 2.3
SSBP3-202ENST00000357475 PPP1R11O60927 126 aaPredicted RBP29.43■■■□□ 2.3
SSBP3-202ENST00000357475 SMARCA1P28370 1054 aa29.43■■■□□ 2.3
SSBP3-202ENST00000357475 CDC37Q16543 378 aaPredicted RBP29.43■■■□□ 2.3
SSBP3-202ENST00000357475 AIFM3Q96NN9 605 aa29.43■■■□□ 2.3
SSBP3-202ENST00000357475 ADAMTS5Q9UNA0 930 aa29.43■■■□□ 2.3
SSBP3-202ENST00000357475 SLC45A1Q9Y2W3 748 aa29.43■■■□□ 2.3
SSBP3-202ENST00000357475 VWA5AO00534 786 aa29.42■■■□□ 2.3
SSBP3-202ENST00000357475 OSBPP22059 807 aa29.42■■■□□ 2.3
SSBP3-202ENST00000357475 HERVK_113P62684 666 aa29.42■■■□□ 2.3
SSBP3-202ENST00000357475 SSRP1Q08945 709 aaKnown RBP29.42■■■□□ 2.3
SSBP3-202ENST00000357475 SREBF2Q12772 1141 aa29.42■■■□□ 2.3
SSBP3-202ENST00000357475 PABPC4Q13310 644 aaKnown RBP eCLIP29.42■■■□□ 2.3
SSBP3-202ENST00000357475 PKN1Q16512 942 aa29.42■■■□□ 2.3
SSBP3-202ENST00000357475 CCDC174Q6PII3 467 aa29.42■■■□□ 2.3
SSBP3-202ENST00000357475 CPLX2Q6PUV4 134 aaKnown RBP29.42■■■□□ 2.3
SSBP3-202ENST00000357475 LLPHQ9BRT6 129 aaKnown RBP29.42■■■□□ 2.3
SSBP3-202ENST00000357475 RANBP17Q9H2T7 1088 aaKnown RBP29.42■■■□□ 2.3
SSBP3-202ENST00000357475 PRPF3O43395 683 aaKnown RBP29.41■■■□□ 2.3
SSBP3-202ENST00000357475 INHBEP58166 350 aa29.41■■■□□ 2.3
SSBP3-202ENST00000357475 QRICH1Q2TAL8 776 aa29.41■■■□□ 2.3
SSBP3-202ENST00000357475 REPS2Q8NFH8 660 aa29.41■■■□□ 2.3
SSBP3-202ENST00000357475 SLC38A10Q9HBR0 1119 aa29.41■■■□□ 2.3
SSBP3-202ENST00000357475 ZNF536O15090 1300 aa29.41■■■□□ 2.3
SSBP3-202ENST00000357475 CDKL5O76039 1030 aa29.4■■■□□ 2.3
SSBP3-202ENST00000357475 RNF26Q9BY78 433 aaPredicted RBP29.4■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms