RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 TAB2Q9NYJ8 693 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 BCCIPQ9P287 314 aaKnown RBP eCLIP11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.35□□□□□ -0.599e-7■□□□□ 10
SMARCA1-205ENST00000617310 V9GYY5 206 aaPredicted RBP11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 BMP3P12645 472 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 XKR9Q5GH70 373 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 NEK8Q86SG6 692 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 MTMR6Q9Y217 621 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 TECPR2O15040 1411 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 H0YHG0 523 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 CCDC172P0C7W6 258 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 PNOCQ13519 176 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 FBXO18Q8NFZ0 1043 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 SLC10A4Q96EP9 437 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 WRNIP1Q96S55 665 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 MXD3Q9BW11 206 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 SPC25Q9HBM1 224 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 ZMYM6O95789 1325 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 A0A087WWV3 80 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 NMT2O60551 498 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 HOXA13P31271 388 aaPredicted RBP11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 BRIP1Q9BX63 1249 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 OSBPL3Q9H4L5 887 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 MED23Q9ULK4 1368 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 CAMSAP1Q5T5Y3 1602 aa11.34□□□□□ -0.59
SMARCA1-205ENST00000617310 COBLO75128 1261 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 EPB41P11171 864 aaKnown RBP11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 CD19P15391 556 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 ACTN2P35609 894 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 IFFO1Q0D2I5 559 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 LRMPQ12912 555 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 SEPT14Q6ZU15 432 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 UBN2Q6ZU65 1347 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 KIF2AO00139 706 aaPredicted RBP11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 LARGE1O95461 756 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 LONRF3Q496Y0 759 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 FAM102BQ5T8I3 360 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 EP400NLQ6ZTU2 488 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 PODNQ7Z5L7 613 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 GPBP1Q86WP2 473 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 FAM84BQ96KN1 310 aaPredicted RBP11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 ZHX1Q9UKY1 873 aaPredicted RBP11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 ZHX2Q9Y6X8 837 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 DIP2BQ9P265 1576 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 ARHGEF40Q8TER5 1519 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 KRT9P35527 623 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 CYP2J2P51589 502 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 PABPC4Q13310 644 aaKnown RBP eCLIP11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 SEPT2Q15019 361 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 POSTNQ15063 836 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 UBE2SQ16763 222 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 PPP1R9BQ96SB3 815 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 ATP10DQ9P241 1426 aa11.33□□□□□ -0.6
SMARCA1-205ENST00000617310 CPDO75976 1380 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 SPATA31A5Q5VU36 1347 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 SPATA31A7Q8IWB4 1347 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 BRD1O95696 1058 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 EIF2AK2P19525 551 aaKnown RBP11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 CACNB1Q02641 598 aaPredicted RBP11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 SPP2Q13103 211 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 TRPC3Q13507 836 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 GPATCH4Q5T3I0 446 aaKnown RBP11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 CNNM4Q6P4Q7 775 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 TMCO3Q6UWJ1 677 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 CAPZA3Q96KX2 299 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 WDR70Q9NW82 654 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 COMMD10Q9Y6G5 202 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 CPS1P31327 1500 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 PFKFB1P16118 471 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 DNM2P50570 870 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 KIF5AQ12840 1032 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 UVSSAQ2YD98 709 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 ATL3Q6DD88 541 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 PROCA1Q8NCQ7 364 aaPredicted RBP11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 DDX25Q9UHL0 483 aaKnown RBP11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 PPP1R16BQ96T49 567 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 NLRC4Q9NPP4 1024 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 CLIC4Q9Y696 253 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 SPHKAPQ2M3C7 1700 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 IFT172Q9UG01 1749 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 MADDQ8WXG6 1647 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 OR52Z1P0C646 297 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 KIF22Q14807 665 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 ARMC9Q7Z3E5 817 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 CCDC127Q96BQ5 260 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 RBSNQ9H1K0 784 aa11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 DHX36Q9H2U1 1008 aaKnown RBP11.32□□□□□ -0.6
SMARCA1-205ENST00000617310 SSH2Q76I76 1423 aa11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 E9PCH4 1651 aa11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 LRRIQ4A6NIV6 560 aa11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 NR1I2O75469 434 aa11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 CAMTA2O94983 1202 aa11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 RNASE9P60153 205 aaKnown RBP11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 PAK1Q13153 545 aa11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 IGSF22Q8N9C0 903 aa11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 NCAPD2Q15021 1401 aa11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 SYNRGQ9UMZ2 1314 aa11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 EIF3JO75822 258 aaKnown RBP11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 PLEKHA8P1O95397 391 aa11.31□□□□□ -0.6
SMARCA1-205ENST00000617310 TNNI1P19237 187 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms