RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ZSCAN22P10073 491 aaPredicted RBP17.68■□□□□ 0.42
SS18-215ENST00000580642 TRAF1Q13077 416 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 PFKFB3Q16875 520 aaPredicted RBP17.68■□□□□ 0.42
SS18-215ENST00000580642 LDLRAD1Q5T700 205 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 IFFO2Q5TF58 517 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 CHADLQ6NUI6 762 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 TEX2Q8IWB9 1127 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 STAG2Q8N3U4 1231 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 FBXO18Q8NFZ0 1043 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 ACER1Q8TDN7 264 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 PHKBQ93100 1093 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 ZKSCAN4Q969J2 545 aaPredicted RBP17.68■□□□□ 0.42
SS18-215ENST00000580642 C8orf76Q96K31 380 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 C12orf42Q96LP6 360 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 FEZ1Q99689 392 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 ALG1Q9BT22 464 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 NMRK2Q9NPI5 230 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 MTMR6Q9Y217 621 aa17.68■□□□□ 0.42
SS18-215ENST00000580642 V9GY48 417 aaPredicted RBP17.68■□□□□ 0.42
SS18-215ENST00000580642 WDR46O15213 610 aaKnown RBP17.67■□□□□ 0.42
SS18-215ENST00000580642 ECE1P42892 770 aa17.67■□□□□ 0.42
SS18-215ENST00000580642 BACE1P56817 501 aa17.67■□□□□ 0.42
SS18-215ENST00000580642 PPATQ06203 517 aa17.67■□□□□ 0.42
SS18-215ENST00000580642 VGLL4Q14135 290 aa17.67■□□□□ 0.42
SS18-215ENST00000580642 CCDC96Q2M329 555 aa17.67■□□□□ 0.42
SS18-215ENST00000580642 MAP1SQ66K74 1059 aaPredicted RBP17.67■□□□□ 0.42
SS18-215ENST00000580642 CLEC17AQ6ZS10 378 aa17.67■□□□□ 0.42
SS18-215ENST00000580642 FAM160B2Q86V87 743 aa17.67■□□□□ 0.42
SS18-215ENST00000580642 ERO1BQ86YB8 467 aa17.67■□□□□ 0.42
SS18-215ENST00000580642 CHURC1Q8WUH1 139 aa17.67■□□□□ 0.42
SS18-215ENST00000580642 RRP36Q96EU6 259 aaKnown RBP17.67■□□□□ 0.42
SS18-215ENST00000580642 ZSCAN16Q9H4T2 348 aaPredicted RBP17.67■□□□□ 0.42
SS18-215ENST00000580642 DOCK1Q14185 1865 aa17.67■□□□□ 0.42
SS18-215ENST00000580642 POLR2AP24928 1970 aaKnown RBP17.66■□□□□ 0.42
SS18-215ENST00000580642 SCG2P13521 617 aa17.66■□□□□ 0.42
SS18-215ENST00000580642 SH3D19Q5HYK7 790 aa17.66■□□□□ 0.42
SS18-215ENST00000580642 GALNT17Q6IS24 598 aa17.66■□□□□ 0.42
SS18-215ENST00000580642 CCDC12Q8WUD4 166 aaPredicted RBP17.66■□□□□ 0.42
SS18-215ENST00000580642 MTMR8Q96EF0 704 aa17.66■□□□□ 0.42
SS18-215ENST00000580642 SEC63Q9UGP8 760 aaKnown RBP17.66■□□□□ 0.42
SS18-215ENST00000580642 FEM1BQ9UK73 627 aa17.66■□□□□ 0.42
SS18-215ENST00000580642 PNMA2Q9UL42 364 aa17.66■□□□□ 0.42
SS18-215ENST00000580642 AFG3L2Q9Y4W6 797 aa17.66■□□□□ 0.42
SS18-215ENST00000580642 SNCAIPQ9Y6H5 919 aa17.66■□□□□ 0.42
SS18-215ENST00000580642 ZHX2Q9Y6X8 837 aa17.66■□□□□ 0.42
SS18-215ENST00000580642 SPDYE5A6NIY4 337 aa17.65■□□□□ 0.42
SS18-215ENST00000580642 CXCL11O14625 94 aa17.65■□□□□ 0.42
SS18-215ENST00000580642 CYTH3O43739 400 aa17.65■□□□□ 0.42
SS18-215ENST00000580642 POTEIP0CG38 1075 aa17.65■□□□□ 0.42
SS18-215ENST00000580642 POTEJP0CG39 1038 aa17.65■□□□□ 0.42
SS18-215ENST00000580642 FDX1P10109 184 aa17.65■□□□□ 0.42
SS18-215ENST00000580642 PKN1Q16512 942 aa17.65■□□□□ 0.42
SS18-215ENST00000580642 MYH4Q9Y623 1939 aa17.64■□□□□ 0.42
SS18-215ENST00000580642 PNMA6FA0A0J9YX94 578 aa17.64■□□□□ 0.41
SS18-215ENST00000580642 GOLGA8HP0CJ92 632 aa17.64■□□□□ 0.41
SS18-215ENST00000580642 CALML3P27482 149 aa17.64■□□□□ 0.41
SS18-215ENST00000580642 STAT2P52630 851 aa17.64■□□□□ 0.41
SS18-215ENST00000580642 SPP2Q13103 211 aa17.64■□□□□ 0.41
SS18-215ENST00000580642 TTLL12Q14166 644 aaPredicted RBP17.64■□□□□ 0.41
SS18-215ENST00000580642 SAFBQ15424 915 aaKnown RBP eCLIP17.64■□□□□ 0.41
SS18-215ENST00000580642 CMTR1Q8N1G2 835 aaKnown RBP17.64■□□□□ 0.41
SS18-215ENST00000580642 CCDC82Q8N4S0 544 aa17.64■□□□□ 0.41
SS18-215ENST00000580642 C2orf69Q8N8R5 385 aa17.64■□□□□ 0.41
SS18-215ENST00000580642 CCDC148Q8NFR7 591 aa17.64■□□□□ 0.41
SS18-215ENST00000580642 GPBP1L1Q9HC44 474 aaPredicted RBP17.64■□□□□ 0.41
SS18-215ENST00000580642 MTMR7Q9Y216 660 aa17.64■□□□□ 0.41
SS18-215ENST00000580642 ZDHHC9Q9Y397 364 aa17.64■□□□□ 0.41
SS18-215ENST00000580642 PAPPA2Q9BXP8 1791 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 VPS37CA5D8V6 355 aaPredicted RBP17.63■□□□□ 0.41
SS18-215ENST00000580642 ITGBL1O95965 494 aaPredicted RBP17.63■□□□□ 0.41
SS18-215ENST00000580642 F13A1P00488 732 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 PPIL2Q13356 520 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 SYDE2Q5VT97 1194 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 ATL3Q6DD88 541 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 PPP1R18Q6NYC8 613 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 ADGRF4Q8IZF3 695 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 GBP4Q96PP9 640 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 GPCPD1Q9NPB8 672 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 BARHL2Q9NY43 387 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 TMOD4Q9NZQ9 345 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 FRMPD2Q68DX3 1309 aaPredicted RBP17.63■□□□□ 0.41
SS18-215ENST00000580642 ATAD5Q96QE3 1844 aa17.63■□□□□ 0.41
SS18-215ENST00000580642 ESYT2A0FGR8 921 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 ZBTB5O15062 677 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 MTMR2Q13614 643 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 PKP1Q13835 747 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 PRKG1Q13976 671 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 SLC35G1Q2M3R5 365 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 KRT40Q6A162 431 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 KCTD1Q719H9 257 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 BRAPQ7Z569 592 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 TNPO1Q92973 898 aaKnown RBP17.62■□□□□ 0.41
SS18-215ENST00000580642 GLT8D2Q9H1C3 349 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 JMJD4Q9H9V9 463 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 GBA2Q9HCG7 927 aaPredicted RBP17.62■□□□□ 0.41
SS18-215ENST00000580642 BRMS1Q9HCU9 246 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 EMILIN3Q9NT22 766 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 KCNH4Q9UQ05 1017 aa17.62■□□□□ 0.41
SS18-215ENST00000580642 TMEM232C9JQI7 657 aa17.61■□□□□ 0.41
SS18-215ENST00000580642 RAD21O60216 631 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 106.3 ms