RNA–Protein interactions for RNA: ENST00000567654.1

SF3B3-210, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 334 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-210ENST00000567654 LAMB1P07942 1786 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 PCBP4P57723 403 aaKnown RBP6.92□□□□□ -1.3
SF3B3-210ENST00000567654 FKBP4Q02790 459 aaKnown RBP eCLIP6.92□□□□□ -1.3
SF3B3-210ENST00000567654 COL9A3Q14050 684 aaPredicted RBP6.92□□□□□ -1.3
SF3B3-210ENST00000567654 ECM1Q16610 540 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 ZNF827Q17R98 1081 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 TAF7LQ5H9L4 462 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 ZNF772Q68DY9 489 aaPredicted RBP6.92□□□□□ -1.3
SF3B3-210ENST00000567654 CASC1Q6TDU7 716 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 CLEC4GQ6UXB4 293 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 LDHAL6AQ6ZMR3 332 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 DDX46Q7L014 1031 aaKnown RBP6.92□□□□□ -1.3
SF3B3-210ENST00000567654 GLYCTKQ8IVS8 523 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 SNX21Q969T3 373 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 SEC62Q99442 399 aaKnown RBP6.92□□□□□ -1.3
SF3B3-210ENST00000567654 DNAJC2Q99543 621 aaKnown RBP6.92□□□□□ -1.3
SF3B3-210ENST00000567654 HAUS7Q99871 368 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 ANTXR1Q9H6X2 564 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 ZNF652Q9Y2D9 606 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 RAD50Q92878 1312 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 CARMIL3Q8ND23 1372 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 DLEC1Q9Y238 1755 aa6.92□□□□□ -1.3
SF3B3-210ENST00000567654 MYH2Q9UKX2 1941 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 A6NHS1 94 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 WTIPA6NIX2 430 aaPredicted RBP6.91□□□□□ -1.3
SF3B3-210ENST00000567654 TAF5LO75529 589 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 REC8O95072 547 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 FGFR2P21802 821 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 DNM1Q05193 864 aaKnown RBP6.91□□□□□ -1.3
SF3B3-210ENST00000567654 KCNA1Q09470 495 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 SPEM2Q0P670 501 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 TRIP4Q15650 581 aaPredicted RBP6.91□□□□□ -1.3
SF3B3-210ENST00000567654 ATP2B3Q16720 1220 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 TXNRD1Q16881 649 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 NOM1Q5C9Z4 860 aaKnown RBP6.91□□□□□ -1.3
SF3B3-210ENST00000567654 METTL24Q5JXM2 366 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 PI16Q6UXB8 463 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 CCDC129Q6ZRS4 1044 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 ZNF589Q86UQ0 364 aaPredicted RBP6.91□□□□□ -1.3
SF3B3-210ENST00000567654 EDEM1Q92611 657 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 BHMTQ93088 406 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 FSD1Q9BTV5 496 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 SLKQ9H2G2 1235 aaPredicted RBP6.91□□□□□ -1.3
SF3B3-210ENST00000567654 CNNM1Q9NRU3 951 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 GNEQ9Y223 722 aaKnown RBP6.91□□□□□ -1.3
SF3B3-210ENST00000567654 TAF6LQ9Y6J9 622 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 RFX7Q2KHR2 1363 aa6.91□□□□□ -1.3
SF3B3-210ENST00000567654 COL1A1P02452 1464 aaPredicted RBP6.91□□□□□ -1.3
SF3B3-210ENST00000567654 ADAMTSL1Q8N6G6 1762 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 FOCADQ5VW36 1801 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 SOWAHDA6NJG2 315 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 GOLIM4O00461 696 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 SASH3O75995 380 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 PDE8BO95263 885 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 IFIT1P09914 478 aaKnown RBP6.9□□□□□ -1.3
SF3B3-210ENST00000567654 HSPA4P34932 840 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 SF3B2Q13435 895 aaKnown RBP6.9□□□□□ -1.3
SF3B3-210ENST00000567654 BECN1Q14457 450 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 NFIXQ14938 502 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 SF3B3Q15393 1217 aaKnown RBP6.9□□□□□ -1.3
SF3B3-210ENST00000567654 SLC10A5Q5PT55 438 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 CELF1Q92879 486 aaKnown RBP6.9□□□□□ -1.3
SF3B3-210ENST00000567654 ACDQ96AP0 544 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 IL17RAQ96F46 866 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 ANP32EQ9BTT0 268 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 DIAPH3Q9NSV4 1193 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 PAG1Q9NWQ8 432 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 EGFL7Q9UHF1 273 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 KLF15Q9UIH9 416 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 PRR12Q9ULL5 1215 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 SNX14Q9Y5W7 946 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 KCNMB2Q9Y691 235 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 CCDC171Q6TFL3 1326 aa6.9□□□□□ -1.3
SF3B3-210ENST00000567654 FZD6O60353 706 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 FAM13AO94988 1023 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 GYS1P13807 737 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 CPA1P15085 419 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 TARSP26639 723 aaKnown RBP6.89□□□□□ -1.31
SF3B3-210ENST00000567654 TM4SF1P30408 202 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 RFC4P35249 363 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 DDIT3P35638 169 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 MCAMP43121 646 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 PHKA1P46020 1223 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 ARHGAP4P98171 946 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 SRSF11Q05519 484 aaKnown RBP6.89□□□□□ -1.31
SF3B3-210ENST00000567654 CHRNDQ07001 517 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 DDR1Q08345 913 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 LAMC2Q13753 1193 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 RABEP1Q15276 862 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 CCDC152Q4G0S7 254 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 TTC39AQ5SRH9 613 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 TRAPPC3LQ5T215 181 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 LYPD4Q6UWN0 246 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 SYT9Q86SS6 491 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 HSCBQ8IWL3 235 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 KBTBD3Q8NAB2 608 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.89□□□□□ -1.31
SF3B3-210ENST00000567654 SETDB2Q96T68 719 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 GSX2Q9BZM3 304 aa6.89□□□□□ -1.31
SF3B3-210ENST00000567654 BIN2Q9UBW5 565 aaPredicted RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms