RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 MRC1P22897 1456 aa7.02□□□□□ -1.29
ATPAF1-204ENST00000474020 ADAMTS7Q9UKP4 1686 aa7.02□□□□□ -1.29
ATPAF1-204ENST00000474020 WDR17Q8IZU2 1322 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 WDR33Q9C0J8 1336 aaKnown RBP7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 RGPD2P0DJD1 1756 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 SMNDC1O75940 238 aaKnown RBP eCLIP7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 H2AFB1P0C5Y9 115 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 H2AFB2P0C5Z0 115 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 NPR3P17342 541 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 MZF1P28698 734 aaPredicted RBP7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 HSPA1LP34931 641 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 ATP11AP98196 1134 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 SLC39A6Q13433 755 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 GCKRQ14397 625 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 ANKRD1Q15327 319 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 CHRNA2Q15822 529 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 PROSER3Q2NL68 480 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 CWF19L2Q2TBE0 894 aaKnown RBP7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 LRRFIP1Q32MZ4 808 aaKnown RBP7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 MCTP1Q6DN14 999 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 COPS6Q7L5N1 327 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 PI4K2BQ8TCG2 481 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 TRIM44Q96DX7 344 aaPredicted RBP7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 TMX3Q96JJ7 454 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 FSD1Q9BTV5 496 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 USTQ9Y2C2 406 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 PARP4Q9UKK3 1724 aaKnown RBP7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 MEGF6O75095 1541 aa7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 KDM6AO15550 1401 aaPredicted RBP7.01□□□□□ -1.29
ATPAF1-204ENST00000474020 COL15A1P39059 1388 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 RFX7Q2KHR2 1363 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 CARNS1A5YM72 827 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 IL2RBP14784 551 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 MTMR3Q13615 1198 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 SETDB1Q15047 1291 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 CEP135Q66GS9 1140 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 CWC27Q6UX04 472 aaKnown RBP7□□□□□ -1.29
ATPAF1-204ENST00000474020 NCAPG2Q86XI2 1143 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 TICAM2Q86XR7 235 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 FAM43AQ8N2R8 423 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 CEP120Q8N960 986 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 WFDC12Q8WWY7 111 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 CHMP4CQ96CF2 233 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 SUCLG2Q96I99 432 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 ZNF496Q96IT1 587 aaPredicted RBP7□□□□□ -1.29
ATPAF1-204ENST00000474020 SSBP4Q9BWG4 385 aaPredicted RBP7□□□□□ -1.29
ATPAF1-204ENST00000474020 TEX13AQ9BXU3 409 aaPredicted RBP7□□□□□ -1.29
ATPAF1-204ENST00000474020 RASSF4Q9H2L5 321 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 BICC1Q9H694 974 aaKnown RBP7□□□□□ -1.29
ATPAF1-204ENST00000474020 GRPEL1Q9HAV7 217 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 SH2B1Q9NRF2 756 aaPredicted RBP7□□□□□ -1.29
ATPAF1-204ENST00000474020 HMG20BQ9P0W2 317 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 BRPF3Q9ULD4 1205 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 LIMCH1Q9UPQ0 1083 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 PPME1Q9Y570 386 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 CYP46A1Q9Y6A2 500 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 SIPA1L3O60292 1781 aaPredicted RBP7□□□□□ -1.29
ATPAF1-204ENST00000474020 SCN11AQ9UI33 1791 aa7□□□□□ -1.29
ATPAF1-204ENST00000474020 PKD1L3Q7Z443 1732 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 A0A087WZG4 1122 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 FSD2A1L4K1 749 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 FAM13AO94988 1023 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 MAP4K4O95819 1239 aaPredicted RBP6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 NOS3P29474 1203 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 SF3B2Q13435 895 aaKnown RBP6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 CUL4AQ13619 759 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 KRT32Q14532 448 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 KIF6Q6ZMV9 814 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 BRINP3Q76B58 766 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 NOL8Q76FK4 1167 aaKnown RBP6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 TTC16Q8NEE8 873 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 TP53INP1Q96A56 240 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 CARD10Q9BWT7 1032 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 PBX4Q9BYU1 374 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 TM6SF1Q9BZW5 370 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 MRPL18Q9H0U6 180 aaKnown RBP6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 PDRG1Q9NUG6 133 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 CWC25Q9NXE8 425 aaPredicted RBP6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 CNTN3Q9P232 1028 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 SMC3Q9UQE7 1217 aa6.99□□□□□ -1.29
ATPAF1-204ENST00000474020 CYP27B1O15528 508 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 CASTP20810 708 aaKnown RBP6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 PDCP20941 246 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 CDC27P30260 824 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 IREB2P48200 963 aaKnown RBP6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 FKBP4Q02790 459 aaKnown RBP eCLIP6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 VPS53Q5VIR6 699 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 UBE3BQ7Z3V4 1068 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 TMEM130Q8N3G9 435 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 C1orf127Q8N9H9 656 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 DDX17Q92841 729 aaKnown RBP6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 JAKMIP1Q96N16 626 aaKnown RBP6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 LSG1Q9H089 658 aaKnown RBP6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 SIL1Q9H173 461 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 COPRSQ9NQ92 184 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 TMOD3Q9NYL9 352 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 KANSL3Q9P2N6 904 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 SALL4Q9UJQ4 1053 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 POLIQ9UNA4 740 aa6.98□□□□□ -1.29
ATPAF1-204ENST00000474020 PA2G4Q9UQ80 394 aaKnown RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms