RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 SNHG28P0DPA3 235 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 PTPRAP18433 802 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 PDCP20941 246 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 IREB2P48200 963 aaKnown RBP24.58■■□□□ 1.53
CPNE1-204ENST00000397443 GNAQP50148 359 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 MAP3K9P80192 1104 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 NUCB2P80303 420 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 ZNF543Q08ER8 600 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 VGLL4Q14135 290 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 SLC35G1Q2M3R5 365 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 OTUD7BQ6GQQ9 843 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.58■■□□□ 1.53
CPNE1-204ENST00000397443 ALG1Q9BT22 464 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 ZDHHC9Q9Y397 364 aa24.58■■□□□ 1.53
CPNE1-204ENST00000397443 H3BQV1 296 aa24.57■■□□□ 1.52
CPNE1-204ENST00000397443 SLC16A2P36021 539 aa24.57■■□□□ 1.52
CPNE1-204ENST00000397443 DGKZQ13574 1117 aa24.57■■□□□ 1.52
CPNE1-204ENST00000397443 ASPRV1Q53RT3 343 aa24.57■■□□□ 1.52
CPNE1-204ENST00000397443 IFFO2Q5TF58 517 aa24.57■■□□□ 1.52
CPNE1-204ENST00000397443 GMCL1P1Q8NEA9 526 aa24.57■■□□□ 1.52
CPNE1-204ENST00000397443 GOPCQ9HD26 462 aa24.57■■□□□ 1.52
CPNE1-204ENST00000397443 ZHX2Q9Y6X8 837 aa24.57■■□□□ 1.52
CPNE1-204ENST00000397443 MYH6P13533 1939 aa24.57■■□□□ 1.52
CPNE1-204ENST00000397443 RNF26Q9BY78 433 aaPredicted RBP24.57■■□□□ 1.52
CPNE1-204ENST00000397443 SH2D4AQ9H788 454 aa24.57■■□□□ 1.52
CPNE1-204ENST00000397443 TRIM75PA6NK02 468 aa24.56■■□□□ 1.52
CPNE1-204ENST00000397443 CYTH3O43739 400 aa24.56■■□□□ 1.52
CPNE1-204ENST00000397443 SPP2Q13103 211 aa24.56■■□□□ 1.52
CPNE1-204ENST00000397443 DCAF4Q8WV16 495 aa24.56■■□□□ 1.52
CPNE1-204ENST00000397443 GINM1Q9NU53 330 aa24.56■■□□□ 1.52
CPNE1-204ENST00000397443 CSADQ9Y600 493 aa24.56■■□□□ 1.52
CPNE1-204ENST00000397443 STK36Q9NRP7 1315 aa24.56■■□□□ 1.52
CPNE1-204ENST00000397443 IKQ13123 557 aaPredicted RBP24.55■■□□□ 1.52
CPNE1-204ENST00000397443 MTMR2Q13614 643 aa24.55■■□□□ 1.52
CPNE1-204ENST00000397443 HOMER1Q86YM7 354 aa24.55■■□□□ 1.52
CPNE1-204ENST00000397443 CLMNQ96JQ2 1002 aa24.55■■□□□ 1.52
CPNE1-204ENST00000397443 C8orf76Q96K31 380 aa24.55■■□□□ 1.52
CPNE1-204ENST00000397443 SNCAIPQ9Y6H5 919 aa24.55■■□□□ 1.52
CPNE1-204ENST00000397443 OTOFQ9HC10 1997 aa24.55■■□□□ 1.52
CPNE1-204ENST00000397443 PRPF3O43395 683 aaKnown RBP24.55■■□□□ 1.52
CPNE1-204ENST00000397443 DEXIO95424 95 aa24.55■■□□□ 1.52
CPNE1-204ENST00000397443 FOXD4L6Q3SYB3 417 aaPredicted RBP24.55■■□□□ 1.52
CPNE1-204ENST00000397443 FOXD4L3Q6VB84 417 aaPredicted RBP24.55■■□□□ 1.52
CPNE1-204ENST00000397443 VCPKMTQ9H867 229 aa24.55■■□□□ 1.52
CPNE1-204ENST00000397443 GPBP1L1Q9HC44 474 aaPredicted RBP24.55■■□□□ 1.52
CPNE1-204ENST00000397443 MTMR6Q9Y217 621 aa24.55■■□□□ 1.52
CPNE1-204ENST00000397443 BRD1O95696 1058 aa24.54■■□□□ 1.52
CPNE1-204ENST00000397443 NOL9Q5SY16 702 aaKnown RBP24.54■■□□□ 1.52
CPNE1-204ENST00000397443 FAM83BQ5T0W9 1011 aa24.54■■□□□ 1.52
CPNE1-204ENST00000397443 GPATCH4Q5T3I0 446 aaKnown RBP24.54■■□□□ 1.52
CPNE1-204ENST00000397443 SAMD1Q6SPF0 538 aaPredicted RBP24.54■■□□□ 1.52
CPNE1-204ENST00000397443 FERMT3Q86UX7 667 aa24.54■■□□□ 1.52
CPNE1-204ENST00000397443 CNKSR2Q8WXI2 1034 aa24.54■■□□□ 1.52
CPNE1-204ENST00000397443 LZTS2Q9BRK4 669 aa24.54■■□□□ 1.52
CPNE1-204ENST00000397443 ELP3Q9H9T3 547 aa24.54■■□□□ 1.52
CPNE1-204ENST00000397443 WDR33Q9C0J8 1336 aaKnown RBP24.54■■□□□ 1.52
CPNE1-204ENST00000397443 BMP3P12645 472 aa24.53■■□□□ 1.52
CPNE1-204ENST00000397443 PKN1Q16512 942 aa24.53■■□□□ 1.52
CPNE1-204ENST00000397443 ARMC9Q7Z3E5 817 aa24.53■■□□□ 1.52
CPNE1-204ENST00000397443 GMCL1Q96IK5 515 aa24.53■■□□□ 1.52
CPNE1-204ENST00000397443 AS3MTQ9HBK9 375 aa24.53■■□□□ 1.52
CPNE1-204ENST00000397443 USP17L10C9JJH3 530 aa24.53■■□□□ 1.52
CPNE1-204ENST00000397443 TMEM232C9JQI7 657 aa24.53■■□□□ 1.52
CPNE1-204ENST00000397443 ZSCAN22P10073 491 aaPredicted RBP24.53■■□□□ 1.52
CPNE1-204ENST00000397443 ZNF280CQ8ND82 737 aa24.53■■□□□ 1.52
CPNE1-204ENST00000397443 WASF1Q92558 559 aa24.53■■□□□ 1.52
CPNE1-204ENST00000397443 MCTP1Q6DN14 999 aa24.52■■□□□ 1.52
CPNE1-204ENST00000397443 TNPO1Q92973 898 aaKnown RBP24.52■■□□□ 1.52
CPNE1-204ENST00000397443 SPZ1Q9BXG8 430 aa24.52■■□□□ 1.52
CPNE1-204ENST00000397443 SYNPO2Q9UMS6 1093 aa24.52■■□□□ 1.52
CPNE1-204ENST00000397443 ANKRD13AQ8IZ07 590 aa24.51■■□□□ 1.51
CPNE1-204ENST00000397443 ADGRF4Q8IZF3 695 aa24.51■■□□□ 1.51
CPNE1-204ENST00000397443 GPKOWQ92917 476 aaPredicted RBP eCLIP24.51■■□□□ 1.511e-7■■■■□ 26.1
CPNE1-204ENST00000397443 PIGSQ96S52 555 aa24.51■■□□□ 1.51
CPNE1-204ENST00000397443 KIAA1683Q9H0B3 1180 aa24.51■■□□□ 1.51
CPNE1-204ENST00000397443 VPS54Q9P1Q0 977 aa24.51■■□□□ 1.51
CPNE1-204ENST00000397443 CELF2O95319 508 aaKnown RBP24.51■■□□□ 1.51
CPNE1-204ENST00000397443 CHADLQ6NUI6 762 aa24.51■■□□□ 1.51
CPNE1-204ENST00000397443 CHAMP1Q96JM3 812 aa24.51■■□□□ 1.51
CPNE1-204ENST00000397443 TRIM29Q14134 588 aa24.5■■□□□ 1.51
CPNE1-204ENST00000397443 RRP36Q96EU6 259 aaKnown RBP24.5■■□□□ 1.51
CPNE1-204ENST00000397443 OTUD5Q96G74 571 aa24.5■■□□□ 1.51
CPNE1-204ENST00000397443 WDR18Q9BV38 432 aa24.5■■□□□ 1.51
CPNE1-204ENST00000397443 KCNJ14Q9UNX9 436 aa24.5■■□□□ 1.51
CPNE1-204ENST00000397443 SCG2P13521 617 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 HMGCS2P54868 508 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 BACE1P56817 501 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 SNAP25P60880 206 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 KRT40Q6A162 431 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 FBXO18Q8NFZ0 1043 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 RIOX1Q9H6W3 641 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 SEC63Q9UGP8 760 aaKnown RBP24.49■■□□□ 1.51
CPNE1-204ENST00000397443 PHIPQ8WWQ0 1821 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 PAPPA2Q9BXP8 1791 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 F13A1P00488 732 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 JMJD4Q9H9V9 463 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 EMILIN3Q9NT22 766 aa24.49■■□□□ 1.51
CPNE1-204ENST00000397443 MAP3K11Q16584 847 aa24.48■■□□□ 1.51
CPNE1-204ENST00000397443 PFKFB3Q16875 520 aaPredicted RBP24.48■■□□□ 1.51
CPNE1-204ENST00000397443 HEATR3Q7Z4Q2 680 aa24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms