RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 IFT122Q9HBG6 1241 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 KRT82Q9NSB4 513 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 AOX1Q06278 1338 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 A0A1B0GVL5 298 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 RASSF10A6NK89 507 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 KLHL30Q0D2K2 578 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 RAB44Q7Z6P3 723 aaPredicted RBP6.76□□□□□ -1.33
CSMD1-201ENST00000335551 NELFBQ8WX92 580 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 SH3GL2Q99962 352 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 SYCE1LA8MT33 242 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 CHUKO15111 745 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 CDKL2Q92772 493 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 ZBTB24O43167 697 aaPredicted RBP6.76□□□□□ -1.33
CSMD1-201ENST00000335551 ZNF202O95125 648 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 P4HA1P13674 534 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 PDZD4Q76G19 769 aaPredicted RBP6.76□□□□□ -1.33
CSMD1-201ENST00000335551 CNPY4Q8N129 248 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 SIRT1Q96EB6 747 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 TRAIPQ9BWF2 469 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 ART3Q13508 389 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 SESTD1Q86VW0 696 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 SRRM1Q8IYB3 904 aaKnown RBP6.76□□□□□ -1.33
CSMD1-201ENST00000335551 RNF34Q969K3 372 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 RAB20Q9NX57 234 aa6.76□□□□□ -1.33
CSMD1-201ENST00000335551 RWDD2BP57060 319 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 HDAC11Q96DB2 347 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 SLF1Q9BQI6 1058 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 MRPL40Q9NQ50 206 aaKnown RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 ZNF215Q9UL58 517 aaPredicted RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 KRT81Q14533 505 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 TSHZ3Q63HK5 1081 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 CREB3L3Q68CJ9 461 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 TMOD3Q9NYL9 352 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 MAP3K2Q9Y2U5 619 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 MAGI1Q96QZ7 1491 aaPredicted RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 MAGEA1P43355 309 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 LRRC8BQ6P9F7 803 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 TMOD4Q9NZQ9 345 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 PPME1Q9Y570 386 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 MYH7P12883 1935 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 PYGBP11216 843 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 MAP3K10Q02779 954 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 MCF2LO15068 1137 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 CTNND1O60716 968 aaKnown RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 HOXA7P31268 230 aaPredicted RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 RNF207Q6ZRF8 634 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 C2CD5Q86YS7 1000 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 CTTNBP2Q8WZ74 1663 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 MYH8P13535 1937 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 GTPBP10A4D1E9 387 aaKnown RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 PSMC1P62191 440 aaKnown RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 ATG16L1Q676U5 607 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 PAG1Q9NWQ8 432 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 DCTN3O75935 186 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 TRMT1LQ7Z2T5 733 aaKnown RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 TRIML2Q8N7C3 387 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 FAM212AQ96EL1 285 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 DYDC2Q96IM9 177 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 PSMB7Q99436 277 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 N4BP1O75113 896 aaKnown RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 DAB1O75553 588 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 PPP2R5CQ13362 524 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 GRAMD1BQ3KR37 738 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 TYW1BQ6NUM6 668 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 ZNF644Q9H582 1327 aaPredicted RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 RRS1Q15050 365 aaKnown RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 TBC1D23Q9NUY8 699 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 STOML1Q9UBI4 398 aa6.75□□□□□ -1.33
CSMD1-201ENST00000335551 TRMT112Q9UI30 125 aaKnown RBP6.75□□□□□ -1.33
CSMD1-201ENST00000335551 TADA3O75528 432 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 CA8P35219 290 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 OR9Q1Q8NGQ5 310 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 ING2Q9H160 280 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 VPS16Q9H269 839 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 PPP2R2CQ9Y2T4 447 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 URB1O60287 2271 aaKnown RBP6.74□□□□□ -1.33
CSMD1-201ENST00000335551 POLR2DO15514 142 aaKnown RBP6.74□□□□□ -1.33
CSMD1-201ENST00000335551 APOBRQ0VD83 1088 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 NCAPH2Q6IBW4 605 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 AFAP1Q8N556 730 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 SLC4A4Q9Y6R1 1079 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 CCDC151A5D8V7 595 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 KCNK3O14649 394 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 TMED10P49755 219 aaKnown RBP6.74□□□□□ -1.33
CSMD1-201ENST00000335551 LONRF3Q496Y0 759 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 ZNF280CQ8ND82 737 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 CATSPER1Q8NEC5 780 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 C10orf88Q9H8K7 445 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 STAM2O75886 525 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 CFAP70Q5T0N1 1121 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 PODNQ7Z5L7 613 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 TTLL12Q14166 644 aaPredicted RBP6.74□□□□□ -1.33
CSMD1-201ENST00000335551 BEND3Q5T5X7 828 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.74□□□□□ -1.33
CSMD1-201ENST00000335551 GSDMAQ96QA5 445 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 CSRNP1Q96S65 589 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 HAUS4Q9H6D7 363 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 MIS18AQ9NYP9 233 aa6.74□□□□□ -1.33
CSMD1-201ENST00000335551 KCNG1Q9UIX4 513 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms