RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Lig3P97386 1015 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Mier3Q3UHF3 551 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Srek1ip1Q4V9W2 153 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Gas7Q60780 421 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Rbm41Q8JZV4 413 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Kdm4cQ8VCD7 1054 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Trim71Q1PSW8 855 aaKnown RBP13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Nhej1Q3KNJ2 295 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Gngt2Q61017 69 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Jarid2Q62315 1234 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ccdc154Q6RUT8 657 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 PalldQ9ET54 1408 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Rnaseh1O70338 285 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Gm10488Q4KL05 212 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Gm14819Q62478 212 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Nr1i2O54915 431 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Trim80Q3V061 624 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Armcx3Q8BHS6 379 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Slc4a7Q8BTY2 1034 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Cfap36Q8C6E0 343 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Apol10aQ8CCA5 318 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Mrps22Q9CXW2 359 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Dnaaf1Q9D2H9 634 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 AU022751B1B0V2 589 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 PsdQ5DTT2 1024 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Tubgcp2Q921G8 905 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Tom1l1Q923U0 474 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Skint5A7XUY5 1461 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Erich3F6QRE9 1637 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Fam47cQ14BE7 430 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Acot10Q32MW3 439 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ppp1r7Q3UM45 361 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Daam2Q80U19 1115 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Mtrf1lQ8BJU9 373 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Gdap1O88741 358 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Hspa8P63017 646 aaKnown RBP13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ccdc92bQ5SUE3 299 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Tfcp2Q9ERA0 502 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Adcy10Q8C0T9 1614 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Wdr44Q6NVE8 915 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 1700020D05RikQ99PB1 294 aa13.07□□□□□ -0.32
Trim56-201ENSMUST00000054384 Pprc1Q6NZN1 1644 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Gm14525B1AZA0 212 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Gm2012B1B0R1 212 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 HarsQ61035 509 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ppp2r5aQ6PD03 486 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 PaoxQ8C0L6 504 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Tsta3P23591 321 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Kpna2P52293 529 aaKnown RBP13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 AdkP55264 361 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Actn4P57780 912 aaKnown RBP13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Cnot10Q8BH15 744 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 D130040H23RikQ8BII3 405 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Bnip3lQ9Z2F7 218 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Hspa1lP16627 641 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Xrcc5P27641 732 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 VrtnQ3SYK4 740 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Trim32Q8CH72 655 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Kat14Q8CID0 779 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Desi2Q9D291 194 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 1700013H16RikQ9DAC5 291 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Prune1Q8BIW1 454 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Palm2Q8BR92 376 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Efcab8Q8C9R9 203 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Kcnk16G5E845 292 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Mapkapk5O54992 473 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Pank2Q3U4S0 443 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Mterf4Q8BVN4 346 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ska2Q9CR46 120 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 PdclQ9DBX2 301 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Lrrc9Q8CDN9 1456 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Frmd4bQ920B0 1035 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Lmnb2P21619 596 aaKnown RBP13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Bola2Q8BGS2 86 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 ThemisQ8BGW0 636 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Mettl24Q8CCB5 363 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Mylk2Q8VCR8 613 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ssfa2Q922B9 1252 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 Eif2ak4Q9QZ05 1648 aa13.06□□□□□ -0.32
Trim56-201ENSMUST00000054384 1700006A11RikB9EHI3 544 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 SpertQ32MG2 446 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ulk3Q3U3Q1 472 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ppp2r2cQ8BG02 447 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Wbp11Q923D5 641 aaKnown RBP13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Esr2O08537 530 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Stx2Q00262 289 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Galnt17Q7TT15 598 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Gnl3Q8CI11 538 aaKnown RBP13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Abhd8Q8R0P8 439 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ppp2r5dQ91V89 594 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Vamp4O70480 141 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 EsrrgP62509 458 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ccdc33Q3ULW6 985 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Zbtb45Q52KG4 520 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Rtl9Q32KG4 1339 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Lrrc7Q80TE7 1490 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Cpb1B2RS76 415 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Trim16Q99PP9 556 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Arhgap42B2RQE8 841 aa13.05□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ighmbp2P40694 993 aa13.05□□□□□ -0.32
Retrieved 100 of 22,080 RNA–protein pairs in 14.5 ms