RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	EXO5	P38289	585 aa		4.89	□□□□□ -1.63
CAF4	YKR036C	POP4	P38336	279 aa		4.89	□□□□□ -1.63
CAF4	YKR036C	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
CAF4	YKR036C	ASG1	P40467	964 aa		4.89	□□□□□ -1.63
CAF4	YKR036C	ORC5	P50874	479 aa		4.89	□□□□□ -1.63
CAF4	YKR036C	DBP6	P53734	629 aa	Known RBP	4.89	□□□□□ -1.63
CAF4	YKR036C	YNR063W	P53749	607 aa		4.89	□□□□□ -1.63
CAF4	YKR036C	KTR5	P53966	522 aa	Predicted RBP	4.89	□□□□□ -1.63
CAF4	YKR036C	MLC2	Q06580	163 aa		4.89	□□□□□ -1.63
CAF4	YKR036C	PMT7	Q06644	662 aa		4.89	□□□□□ -1.63
CAF4	YKR036C	IPP1	P00817	287 aa	Known RBP	4.88	□□□□□ -1.63
CAF4	YKR036C	TPK2	P06245	380 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	COQ8	P27697	501 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	HEM12	P32347	362 aa	Predicted RBP	4.88	□□□□□ -1.63
CAF4	YKR036C	SPR1	P32603	445 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	GLY1	P37303	387 aa	Known RBP	4.88	□□□□□ -1.63
CAF4	YKR036C	SLX1	P38324	304 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	KRE29	P40026	464 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	HMF1	P40037	129 aa	Known RBP	4.88	□□□□□ -1.63
CAF4	YKR036C	TMN3	P40071	706 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	YJR061W	P40355	935 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	VHR1	P40522	640 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	AGP3	P43548	558 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	SAE2	P46946	345 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	CWC23	P52868	283 aa	Predicted RBP	4.88	□□□□□ -1.63
CAF4	YKR036C	NOP19	P53317	196 aa	Predicted RBP	4.88	□□□□□ -1.63
CAF4	YKR036C	FYV6	P53913	173 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	YMR099C	Q03161	297 aa	Known RBP	4.88	□□□□□ -1.63
CAF4	YKR036C	ATG16	Q03818	150 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	NGL1	Q08213	363 aa	Known RBP	4.88	□□□□□ -1.63
CAF4	YKR036C	RTR2	Q12378	196 aa		4.88	□□□□□ -1.63
CAF4	YKR036C	DCP1	Q12517	231 aa	Predicted RBP	4.88	□□□□□ -1.63
CAF4	YKR036C	BI2	P03873	423 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	TUB3	P09734	445 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	PHO81	P17442	1178 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	YSP3	P25036	478 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	POL4	P25615	582 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	CPR3	P25719	182 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	MGT1	P26188	188 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	SAC1	P32368	623 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	ACP1	P32463	125 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	ARC19	P33204	171 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	GDH2	P33327	1092 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	TAF14	P35189	244 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	PAN5	P38787	379 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	TVP23	P38962	199 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	MNN9	P39107	395 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	FAA2	P39518	744 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	MTW1	P39731	289 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	HPM1	P40481	377 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	SPO74	P45819	413 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	ISM1	P48526	1002 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	KEL2	P50090	882 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	NBP1	P52919	319 aa	Predicted RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	YNR014W	P53719	212 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	TVP15	Q03860	143 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	SMD2	Q06217	110 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	YET3	Q07451	203 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	HRK1	Q08732	759 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	HUA2	Q12134	243 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	PSY3	Q12318	242 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	SNU23	Q12368	194 aa	Predicted RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	TEF1	P02994	458 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	RPS3	P05750	240 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	CBS2	P14905	389 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	MRPL33	P20084	86 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	DBP3	P20447	523 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	AEP2	P22136	580 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	RPA135	P22138	1203 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	PTC6	P25646	442 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	FUB1	P25659	250 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	UGP1	P32861	499 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	TVP38	P36164	337 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	RIM2	P38127	377 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	MSR1	P38714	643 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	YHR219W	P38900	624 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	ECM10	P39987	644 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	YRB2	P40517	327 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	CHS6	P40955	746 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	GLG2	P47011	380 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	ARO8	P53090	500 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	YGR035C	P53222	116 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	CBK1	P53894	756 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	COG5	P53951	403 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	PNG1	Q02890	363 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	RSC9	Q03124	581 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	ADE13	Q05911	482 aa	Known RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	LOT6	Q07923	191 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	THI20	Q08224	551 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	CLP1	Q08685	445 aa	Predicted RBP	4.87	□□□□□ -1.63
CAF4	YKR036C	MED4	Q12343	284 aa		4.87	□□□□□ -1.63
CAF4	YKR036C	STE2	D6VTK4	431 aa		4.86	□□□□□ -1.63
CAF4	YKR036C	CIT1	P00890	479 aa		4.86	□□□□□ -1.63
CAF4	YKR036C	RPS17A	P02407	136 aa	Known RBP	4.86	□□□□□ -1.63
CAF4	YKR036C	MET17	P06106	444 aa		4.86	□□□□□ -1.63
CAF4	YKR036C	SNF1	P06782	633 aa	Known RBP	4.86	□□□□□ -1.63
CAF4	YKR036C	RAD10	P06838	210 aa		4.86	□□□□□ -1.63
CAF4	YKR036C	CDC24	P11433	854 aa	Predicted RBP	4.86	□□□□□ -1.63
CAF4	YKR036C	RPS17B	P14127	136 aa	Known RBP	4.86	□□□□□ -1.63
CAF4	YKR036C	IDI1	P15496	288 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms