RNA–Protein interactions for RNA: YDL229W

SSB1, Transcript of Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, yeast

Gene SSB1, Length 1,842 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSB1	YDL229W	HMT1	P38074	348 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	RFT1	P38206	574 aa	Predicted RBP	4.37	□□□□□ -1.71
SSB1	YDL229W	PRS2	P38620	318 aa	Known RBP	4.37	□□□□□ -1.71
SSB1	YDL229W	GIM4	P40005	111 aa	Known RBP	4.37	□□□□□ -1.71
SSB1	YDL229W	PDS1	P40316	373 aa	Predicted RBP	4.37	□□□□□ -1.71
SSB1	YDL229W	YFR018C	P43599	363 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	LOH1	P47055	219 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	ZPR1	P53303	486 aa	Known RBP	4.37	□□□□□ -1.71
SSB1	YDL229W	SNF12	P53628	566 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	TOF2	Q02208	771 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	YPL034W	Q03083	165 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	YML131W	Q03102	365 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	GPI17	Q04080	534 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	PLM2	Q04383	521 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	GIM5	Q04493	163 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	RCO1	Q04779	684 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	YPR084W	Q06821	456 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	YPR091C	Q06833	770 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	YDL129W	Q07555	291 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	YOL019W	Q08157	551 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	HRK1	Q08732	759 aa	Known RBP	4.37	□□□□□ -1.71
SSB1	YDL229W	GUP2	Q08929	609 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	AIM41	Q12032	185 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	HFI1	Q12060	488 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	PUS9	Q12069	462 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	VPS54	Q12071	889 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	DIN7	Q12086	430 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	TMA7	Q3E764	64 aa	Known RBP	4.37	□□□□□ -1.71
SSB1	YDL229W	FRT1	Q99332	602 aa		4.37	□□□□□ -1.71
SSB1	YDL229W	POM152	P39685	1337 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	RPL25	P04456	142 aa	Known RBP	4.36	□□□□□ -1.71
SSB1	YDL229W	PYC1	P11154	1178 aa	Known RBP	4.36	□□□□□ -1.71
SSB1	YDL229W	GAL3	P13045	520 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	SNA3	P14359	133 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	YAK1	P14680	807 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	MCM10	P32354	571 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	CDC13	P32797	924 aa	Known RBP	4.36	□□□□□ -1.71
SSB1	YDL229W	RAD54	P32863	898 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	DHR2	P36009	735 aa	Predicted RBP	4.36	□□□□□ -1.71
SSB1	YDL229W	MAE1	P36013	669 aa	Known RBP	4.36	□□□□□ -1.71
SSB1	YDL229W	YBL036C	P38197	257 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	YHR112C	P38716	378 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	QNS1	P38795	714 aa	Known RBP	4.36	□□□□□ -1.71
SSB1	YDL229W	GDH3	P39708	457 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	VAB2	P40003	282 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	HXT14	P42833	540 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	SPO74	P45819	413 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	SLX9	P53251	210 aa	Predicted RBP	4.36	□□□□□ -1.71
SSB1	YDL229W	MAL13	P53338	473 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	DBP6	P53734	629 aa	Known RBP	4.36	□□□□□ -1.71
SSB1	YDL229W	CAF40	P53829	373 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	ADE16	P54113	591 aa	Known RBP	4.36	□□□□□ -1.71
SSB1	YDL229W	ARP4	P80428	489 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	SDH1	Q00711	640 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	YMR279C	Q03263	540 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	SNX41	Q04053	625 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	URC2	Q04411	772 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	YLR173W	Q06247	608 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	KEL3	Q08979	651 aa	Predicted RBP	4.36	□□□□□ -1.71
SSB1	YDL229W	HOS1	Q12214	470 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	YBR298C-A	Q8TGK4	73 aa		4.36	□□□□□ -1.71
SSB1	YDL229W	SNF2	P22082	1703 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	ATP6	P00854	259 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	MET2	P08465	486 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	HSF1	P10961	833 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	TCP1	P12612	559 aa	Known RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	FRS2	P15625	503 aa	Known RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	PDC5	P16467	563 aa	Known RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	CDC42	P19073	191 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	CLN2	P20438	545 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	DBP2	P24783	546 aa	Known RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	CNB1	P25296	175 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	RRT12	P25381	491 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	PMT2	P31382	759 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	KTR4	P38131	464 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	APM2	P38700	605 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	RPS7B	P48164	190 aa	Known RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	COG1	P53079	417 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	YGR125W	P53273	1036 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	RPT6	Q01939	405 aa	Known RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	MUK1	Q02866	612 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	YDR249C	Q03787	373 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	DFG5	Q05031	458 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	PAL1	Q05518	499 aa	Known RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.35	□□□□□ -1.71	not detected
SSB1	YDL229W	RRP12	Q12754	1228 aa	Known RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	YOR093C	Q12275	1648 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	RPS9A	O13516	197 aa	Known RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	TUB2	P02557	457 aa	Known RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	URA3	P03962	267 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	RPS9B	P05755	195 aa	Known RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	CDC36	P06100	191 aa	Predicted RBP	4.35	□□□□□ -1.71
SSB1	YDL229W	PUT2	P07275	575 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	PRI2	P20457	528 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	SRM1	P21827	482 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	MBR1	P23493	339 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	CHS3	P29465	1165 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	SEC65	P29478	273 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	ATP7	P30902	174 aa		4.35	□□□□□ -1.71
SSB1	YDL229W	GSH1	P32477	678 aa		4.35	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms