RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 USP16Q9Y5T5 823 aa9.69□□□□□ -0.86
SPG11-213ENST00000558988 FAM177BA6PVY3 158 aa9.68□□□□□ -0.86
SPG11-213ENST00000558988 USP17L5A8MUK1 530 aa9.68□□□□□ -0.86
SPG11-213ENST00000558988 F13BP05160 661 aa9.68□□□□□ -0.86
SPG11-213ENST00000558988 ARSDP51689 593 aa9.68□□□□□ -0.86
SPG11-213ENST00000558988 CLDN10P78369 228 aa9.68□□□□□ -0.86
SPG11-213ENST00000558988 PKN1Q16512 942 aa9.68□□□□□ -0.86
SPG11-213ENST00000558988 FBXL6Q8N531 539 aa9.68□□□□□ -0.86
SPG11-213ENST00000558988 NGEFQ8N5V2 710 aa9.68□□□□□ -0.86
SPG11-213ENST00000558988 GIMAP7Q8NHV1 300 aa9.68□□□□□ -0.86
SPG11-213ENST00000558988 ZNF622Q969S3 477 aaKnown RBP eCLIP9.68□□□□□ -0.86
SPG11-213ENST00000558988 RBSNQ9H1K0 784 aa9.68□□□□□ -0.86
SPG11-213ENST00000558988 NMRK2Q9NPI5 230 aa9.68□□□□□ -0.86
SPG11-213ENST00000558988 MAPK8IP3Q9UPT6 1336 aa9.67□□□□□ -0.86
SPG11-213ENST00000558988 FARP2O94887 1054 aaPredicted RBP9.67□□□□□ -0.86
SPG11-213ENST00000558988 SNRPA1P09661 255 aaKnown RBP9.67□□□□□ -0.86
SPG11-213ENST00000558988 PREPP48147 710 aa9.67□□□□□ -0.86
SPG11-213ENST00000558988 DDX10Q13206 875 aaKnown RBP9.67□□□□□ -0.86
SPG11-213ENST00000558988 CACTIN-AS1Q8N1I8 211 aa9.67□□□□□ -0.86
SPG11-213ENST00000558988 SCG3Q8WXD2 468 aaKnown RBP9.67□□□□□ -0.86
SPG11-213ENST00000558988 KLK14Q9P0G3 267 aa9.67□□□□□ -0.86
SPG11-213ENST00000558988 ARFGEF1Q9Y6D6 1849 aa9.67□□□□□ -0.86
SPG11-213ENST00000558988 SCN7AQ01118 1682 aa9.67□□□□□ -0.86
SPG11-213ENST00000558988 NCANO14594 1321 aa9.66□□□□□ -0.86
SPG11-213ENST00000558988 H0YIN7 160 aa9.66□□□□□ -0.86
SPG11-213ENST00000558988 DDX3YO15523 660 aaKnown RBP9.66□□□□□ -0.86
SPG11-213ENST00000558988 CAMTA2O94983 1202 aa9.66□□□□□ -0.86
SPG11-213ENST00000558988 PSAPP07602 524 aa9.66□□□□□ -0.86
SPG11-213ENST00000558988 IL6STP40189 918 aaPredicted RBP9.66□□□□□ -0.86
SPG11-213ENST00000558988 TTLL6Q8N841 843 aa9.66□□□□□ -0.86
SPG11-213ENST00000558988 CNBD1Q8NA66 436 aa9.66□□□□□ -0.86
SPG11-213ENST00000558988 UBASH3BQ8TF42 649 aa9.66□□□□□ -0.86
SPG11-213ENST00000558988 SETDB2Q96T68 719 aa9.66□□□□□ -0.86
SPG11-213ENST00000558988 OSBPL1AQ9BXW6 950 aa9.66□□□□□ -0.86
SPG11-213ENST00000558988 KRTAP9-3Q9BYQ3 159 aa9.66□□□□□ -0.86
SPG11-213ENST00000558988 DLG5Q8TDM6 1919 aa9.65□□□□□ -0.86
SPG11-213ENST00000558988 PRRG2O14669 202 aa9.65□□□□□ -0.86
SPG11-213ENST00000558988 TAF7Q15545 349 aaPredicted RBP9.65□□□□□ -0.86
SPG11-213ENST00000558988 PRR5LQ6MZQ0 368 aa9.65□□□□□ -0.86
SPG11-213ENST00000558988 C16orf71Q8IYS4 520 aaPredicted RBP9.65□□□□□ -0.86
SPG11-213ENST00000558988 FLCNQ8NFG4 579 aa9.65□□□□□ -0.86
SPG11-213ENST00000558988 NRXN2Q9P2S2 1712 aa9.65□□□□□ -0.87
SPG11-213ENST00000558988 CDC25BP30305 580 aa9.64□□□□□ -0.87
SPG11-213ENST00000558988 ATP1A2P50993 1020 aa9.64□□□□□ -0.87
SPG11-213ENST00000558988 ST5P78524 1137 aa9.64□□□□□ -0.87
SPG11-213ENST00000558988 NFE2L2Q16236 605 aa9.64□□□□□ -0.87
SPG11-213ENST00000558988 LILRA6Q6PI73 481 aa9.64□□□□□ -0.87
SPG11-213ENST00000558988 NBPF5PQ86XG9 351 aaPredicted RBP9.64□□□□□ -0.87
SPG11-213ENST00000558988 AGBL5Q8NDL9 886 aa9.64□□□□□ -0.87
SPG11-213ENST00000558988 FOXD4L4Q8WXT5 416 aaPredicted RBP9.64□□□□□ -0.87
SPG11-213ENST00000558988 PAK6Q9NQU5 681 aaPredicted RBP9.64□□□□□ -0.87
SPG11-213ENST00000558988 USP20Q9Y2K6 914 aa9.64□□□□□ -0.87
SPG11-213ENST00000558988 RRP7AQ9Y3A4 280 aaKnown RBP9.64□□□□□ -0.87
SPG11-213ENST00000558988 ANKRD31Q8N7Z5 1873 aa9.64□□□□□ -0.87
SPG11-213ENST00000558988 HTATSF1O43719 755 aaKnown RBP9.63□□□□□ -0.87
SPG11-213ENST00000558988 MMP20O60882 483 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 MYL6BP14649 208 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 HSPA6P17066 643 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 PDE6BP35913 854 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 CCDC146Q8IYE0 955 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 SHISA5Q8N114 240 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 BRIP1Q9BX63 1249 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 BSDC1Q9NW68 430 aaPredicted RBP9.63□□□□□ -0.87
SPG11-213ENST00000558988 NIP7Q9Y221 180 aaKnown RBP eCLIP9.63□□□□□ -0.87
SPG11-213ENST00000558988 ZNF652Q9Y2D9 606 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 HIF3AQ9Y2N7 669 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 CACNA1SQ13698 1873 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 BCORQ6W2J9 1755 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 DLEC1Q9Y238 1755 aa9.63□□□□□ -0.87
SPG11-213ENST00000558988 COL11A2P13942 1736 aaPredicted RBP9.62□□□□□ -0.87
SPG11-213ENST00000558988 KDM2BQ8NHM5 1336 aa9.62□□□□□ -0.87
SPG11-213ENST00000558988 ADAM11O75078 769 aa9.62□□□□□ -0.87
SPG11-213ENST00000558988 RASA1P20936 1047 aa9.62□□□□□ -0.87
SPG11-213ENST00000558988 KRTAP19-4Q3LI73 84 aa9.62□□□□□ -0.87
SPG11-213ENST00000558988 PLEKHF1Q96S99 279 aa9.62□□□□□ -0.87
SPG11-213ENST00000558988 LACRTQ9GZZ8 138 aa9.62□□□□□ -0.87
SPG11-213ENST00000558988 PNNQ9H307 717 aaKnown RBP9.62□□□□□ -0.87
SPG11-213ENST00000558988 SBF1O95248 1867 aa9.62□□□□□ -0.87
SPG11-213ENST00000558988 TOMM70O94826 608 aa9.61□□□□□ -0.87
SPG11-213ENST00000558988 MICAL2O94851 1124 aa9.61□□□□□ -0.87
SPG11-213ENST00000558988 EGFRP00533 1210 aa9.61□□□□□ -0.87
SPG11-213ENST00000558988 LMNB1P20700 586 aa9.61□□□□□ -0.87
SPG11-213ENST00000558988 GPTP24298 496 aa9.61□□□□□ -0.87
SPG11-213ENST00000558988 MAP4P27816 1152 aaKnown RBP9.61□□□□□ -0.87
SPG11-213ENST00000558988 RIPK4P57078 832 aa9.61□□□□□ -0.87
SPG11-213ENST00000558988 RALBP1Q15311 655 aa9.61□□□□□ -0.87
SPG11-213ENST00000558988 HLFQ16534 295 aa9.61□□□□□ -0.87
SPG11-213ENST00000558988 ANKRD34AQ69YU3 496 aa9.61□□□□□ -0.87
SPG11-213ENST00000558988 KSR1Q8IVT5 923 aa9.61□□□□□ -0.87
SPG11-213ENST00000558988 PNISRQ8TF01 805 aaKnown RBP9.61□□□□□ -0.87
SPG11-213ENST00000558988 TSPYL4Q9UJ04 414 aa9.61□□□□□ -0.87
SPG11-213ENST00000558988 LAS1LQ9Y4W2 734 aaKnown RBP9.61□□□□□ -0.87
SPG11-213ENST00000558988 LAMB4A4D0S4 1761 aa9.6□□□□□ -0.87
SPG11-213ENST00000558988 CCDC88AQ3V6T2 1871 aa9.6□□□□□ -0.87
SPG11-213ENST00000558988 UTRNP46939 3433 aa9.6□□□□□ -0.87
SPG11-213ENST00000558988 NFKBIEO00221 500 aa9.6□□□□□ -0.87
SPG11-213ENST00000558988 FSCN2O14926 492 aa9.6□□□□□ -0.87
SPG11-213ENST00000558988 XYLBO75191 536 aa9.6□□□□□ -0.87
SPG11-213ENST00000558988 HOXD8P13378 290 aaPredicted RBP9.6□□□□□ -0.87
SPG11-213ENST00000558988 EIF2S2P20042 333 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms