RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 KLHL25Q9H0H3 589 aa7.68□□□□□ -1.18
SCFD1-208ENST00000553278 PCDHGC5Q9Y5F6 944 aa7.68□□□□□ -1.18
SCFD1-208ENST00000553278 SYNGAP1Q96PV0 1343 aa7.68□□□□□ -1.18
SCFD1-208ENST00000553278 LOC100289279A0A1B0GTE1 492 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 EFCAB14O75071 495 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 PPFIA3O75145 1194 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 KATNA1O75449 491 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 PPM1BO75688 479 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 DNAJC8O75937 253 aaPredicted RBP7.67□□□□□ -1.18
SCFD1-208ENST00000553278 UBOX5O94941 541 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 NEK4P51957 841 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 RHBDL3P58872 404 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 MCL1Q07820 350 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 STRN3Q13033 797 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 BIRC2Q13490 618 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 RNF219Q5W0B1 726 aaPredicted RBP7.67□□□□□ -1.18
SCFD1-208ENST00000553278 CDC37L1Q7L3B6 337 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 STRA8Q7Z7C7 330 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 WDR66Q8TBY9 1149 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 NANOS1Q8WY41 292 aaKnown RBP7.67□□□□□ -1.18
SCFD1-208ENST00000553278 FGD4Q96M96 766 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 ASPSCR1Q9BZE9 553 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 SLC5A4Q9NY91 659 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 NDOR1Q9UHB4 597 aa7.67□□□□□ -1.18
SCFD1-208ENST00000553278 C9IYK1 514 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 PLIN1O60240 522 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 LILRB5O75023 590 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 CAND2O75155 1236 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 ASLP04424 464 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 POU3F2P20265 443 aaPredicted RBP7.66□□□□□ -1.18
SCFD1-208ENST00000553278 FLT3P36888 993 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 GNALP38405 381 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 AFF1P51825 1210 aaKnown RBP7.66□□□□□ -1.18
SCFD1-208ENST00000553278 NEK2P51955 445 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 GABREP78334 506 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 DHCR24Q15392 516 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 POMZP3Q6PJE2 187 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 MAP4K3Q8IVH8 894 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 CRACR2BQ8N4Y2 399 aaPredicted RBP7.66□□□□□ -1.18
SCFD1-208ENST00000553278 KCT2Q8NC54 265 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 BVESQ8NE79 360 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 ZNF526Q8TF50 670 aaPredicted RBP7.66□□□□□ -1.18
SCFD1-208ENST00000553278 OSBP2Q969R2 916 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 TRIM47Q96LD4 638 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 APEX2Q9UBZ4 518 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 GGA1Q9UJY5 639 aa7.66□□□□□ -1.18
SCFD1-208ENST00000553278 OPA1O60313 960 aa7.65□□□□□ -1.18
SCFD1-208ENST00000553278 BRINP1O60477 761 aa7.65□□□□□ -1.18
SCFD1-208ENST00000553278 ITKQ08881 620 aa7.65□□□□□ -1.18
SCFD1-208ENST00000553278 C20orf204Q6ZNR8 217 aa7.65□□□□□ -1.18
SCFD1-208ENST00000553278 PHLDB1Q86UU1 1377 aa7.65□□□□□ -1.18
SCFD1-208ENST00000553278 CYB5D2Q8WUJ1 264 aa7.65□□□□□ -1.18
SCFD1-208ENST00000553278 MTMR8Q96EF0 704 aa7.65□□□□□ -1.18
SCFD1-208ENST00000553278 TRIM39Q9HCM9 518 aa7.65□□□□□ -1.18
SCFD1-208ENST00000553278 WHRNQ9P202 907 aa7.65□□□□□ -1.18
SCFD1-208ENST00000553278 STARD13Q9Y3M8 1113 aa7.65□□□□□ -1.18
SCFD1-208ENST00000553278 SHTN1A0MZ66 631 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 CBFA2T2O43439 604 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 SCGB1D2O95969 90 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 APPP05067 770 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 KRT18P05783 430 aaKnown RBP7.64□□□□□ -1.19
SCFD1-208ENST00000553278 GRIA2P42262 883 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 DCAF15Q66K64 600 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 BRAPQ7Z569 592 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 CHPFQ8IZ52 775 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 GOLGA6L1Q8N7Z2 621 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 RNF214Q8ND24 703 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 SLC7A14Q8TBB6 771 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 BAHD1Q8TBE0 780 aaPredicted RBP7.64□□□□□ -1.19
SCFD1-208ENST00000553278 SPOCK3Q9BQ16 436 aa7.64□□□□□ -1.19
SCFD1-208ENST00000553278 MKRN2Q9H000 416 aaKnown RBP7.64□□□□□ -1.19
SCFD1-208ENST00000553278 TNPO3Q9Y5L0 923 aaKnown RBP7.64□□□□□ -1.19
SCFD1-208ENST00000553278 E2F8A0AVK6 867 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 TMPRSS2O15393 492 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 GPR39O43194 453 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 WFS1O76024 890 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 ALBP02768 609 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 C6orf222P0C671 652 aaPredicted RBP7.63□□□□□ -1.19
SCFD1-208ENST00000553278 ATF3P18847 181 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 RAB27AP51159 221 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 MTMR1Q13613 665 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 HLTFQ14527 1009 aaKnown RBP eCLIP7.63□□□□□ -1.19
SCFD1-208ENST00000553278 STAT4Q14765 748 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 MAP9Q49MG5 647 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 ANKRD39Q53RE8 183 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 EXOSC6Q5RKV6 272 aaKnown RBP7.63□□□□□ -1.19
SCFD1-208ENST00000553278 MSL1Q68DK7 614 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 PKN3Q6P5Z2 889 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 SPATS2Q86XZ4 545 aaKnown RBP7.63□□□□□ -1.19
SCFD1-208ENST00000553278 ZNF513Q8N8E2 541 aaPredicted RBP7.63□□□□□ -1.19
SCFD1-208ENST00000553278 GSTCDQ8NEC7 633 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 DCAF11Q8TEB1 546 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 RPS6KC1Q96S38 1066 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 SMAD5Q99717 465 aaKnown RBP7.63□□□□□ -1.19
SCFD1-208ENST00000553278 DPH2Q9BQC3 489 aaPredicted RBP7.63□□□□□ -1.19
SCFD1-208ENST00000553278 ATXN3LQ9H3M9 355 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 SLC52A2Q9HAB3 445 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 FBRSQ9HAH7 460 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 MBIPQ9NS73 344 aa7.63□□□□□ -1.19
SCFD1-208ENST00000553278 CRIM1Q9NZV1 1036 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms