RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Fxr1Q61584 677 aaKnown RBP18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Cfap100Q80VN0 613 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Txndc5Q91W90 417 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 MetP16056 1379 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 1700017N19RikA0A087WPJ1 469 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Tlr8P58682 1032 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Plekhf1Q3TB82 279 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Ankrd23Q812A3 306 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Ccdc73Q8CDM4 1066 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Pcdha7Q91Y13 937 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Krt23Q99PS0 422 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Tubb4aQ9D6F9 444 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 EhhadhQ9DBM2 718 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Gm28042B7ZCM9 1014 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Hap1O35668 628 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Cd3dP04235 173 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Vsnl1P62761 191 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Nab2Q61127 525 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Myo1cQ9WTI7 1063 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Lgr5Q9Z1P4 907 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Shank3Q4ACU6 1730 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Adssl1P28650 457 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Gucy2cQ3UWA6 1072 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Cep112Q5PR68 954 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Tekt3Q6X6Z7 490 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Txndc16Q7TN22 820 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Slc14a2Q8R4T9 930 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Uba5Q8VE47 403 aa18.29■□□□□ 0.52
Trim28-201ENSMUST00000005705 Trim30cD3YVI9 513 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Gjc1P28229 396 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 SsbP32067 415 aaKnown RBP18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Tbx2Q60707 711 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 FntaQ61239 377 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Pde5aQ8CG03 865 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Smc2Q8CG48 1191 aaKnown RBP18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Fbxo3Q9DC63 480 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Sel1lQ9Z2G6 790 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Slc39a2G3X943 309 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Gucy1b3O54865 620 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Foxp1P58462 705 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Chp1P61022 195 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Pramel6Q810Y9 485 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Iqcb1Q8BP00 598 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Tal1P22091 329 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Traf1P39428 409 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Meis3P97368 378 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Krt86P97861 486 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Vps53Q8CCB4 832 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Uap1Q91YN5 522 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Lztfl1Q9JHQ5 299 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 Gja10Q9WUS4 505 aa18.28■□□□□ 0.52
Trim28-201ENSMUST00000005705 MarcksP26645 309 aaKnown RBP18.27■□□□□ 0.52
Trim28-201ENSMUST00000005705 Cnga2Q62398 664 aa18.27■□□□□ 0.52
Trim28-201ENSMUST00000005705 Apol10aQ8CCA5 318 aa18.27■□□□□ 0.52
Trim28-201ENSMUST00000005705 Phc3Q8CHP6 981 aa18.27■□□□□ 0.52
Trim28-201ENSMUST00000005705 MmeQ61391 750 aa18.27■□□□□ 0.52
Trim28-201ENSMUST00000005705 Hgh1Q8C3I8 393 aa18.27■□□□□ 0.52
Trim28-201ENSMUST00000005705 Pcdha12Q91Y18 950 aa18.27■□□□□ 0.52
Trim28-201ENSMUST00000005705 Ampd3O08739 766 aa18.27■□□□□ 0.51
Trim28-201ENSMUST00000005705 Ankrd13cQ3UX43 541 aa18.27■□□□□ 0.51
Trim28-201ENSMUST00000005705 Clec16aQ80U30 1036 aa18.27■□□□□ 0.51
Trim28-201ENSMUST00000005705 Kctd3Q8BFX3 815 aa18.27■□□□□ 0.51
Trim28-201ENSMUST00000005705 Cdc23Q8BGZ4 597 aa18.27■□□□□ 0.51
Trim28-201ENSMUST00000005705 Enox1Q8BHR2 643 aaKnown RBP18.27■□□□□ 0.51
Trim28-201ENSMUST00000005705 LarsQ8BMJ2 1178 aa18.27■□□□□ 0.51
Trim28-201ENSMUST00000005705 HlfQ8BW74 295 aa18.27■□□□□ 0.51
Trim28-201ENSMUST00000005705 Rassf4Q8CB96 322 aa18.27■□□□□ 0.51
Trim28-201ENSMUST00000005705 Sox30Q8CGW4 782 aa18.27■□□□□ 0.51
Trim28-201ENSMUST00000005705 Sgpp1Q9JI99 430 aa18.27■□□□□ 0.51
Trim28-201ENSMUST00000005705 Gm5580A0A0N4SVP8 411 aa18.26■□□□□ 0.51
Trim28-201ENSMUST00000005705 Pde1cQ64338 706 aa18.26■□□□□ 0.51
Trim28-201ENSMUST00000005705 Znf526Q8BI66 675 aa18.26■□□□□ 0.51
Trim28-201ENSMUST00000005705 Klf15Q9EPW2 415 aa18.26■□□□□ 0.51
Trim28-201ENSMUST00000005705 Myo3bQ1EG27 1305 aa18.26■□□□□ 0.51
Trim28-201ENSMUST00000005705 Stat5bP42232 786 aa18.26■□□□□ 0.51
Trim28-201ENSMUST00000005705 Nf2P46662 596 aa18.26■□□□□ 0.51
Trim28-201ENSMUST00000005705 Slc7a1Q09143 622 aa18.26■□□□□ 0.51
Trim28-201ENSMUST00000005705 Tulp1Q9Z273 543 aa18.26■□□□□ 0.51
Trim28-201ENSMUST00000005705 Col3a1P08121 1464 aa18.26■□□□□ 0.51
Trim28-201ENSMUST00000005705 UtrnE9Q6R7 3430 aa18.26■□□□□ 0.51
Trim28-201ENSMUST00000005705 Nme9A0A1L1SUL6 329 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 GabrdP22933 449 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Smarcc1P97496 1104 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Lrrc1Q80VQ1 524 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Spice1Q8C804 860 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Qtrt2B8ZXI1 415 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Casp12O08736 419 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Kif3cO35066 796 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Ginm1Q91WR6 327 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Mtfr1lQ9CWE0 289 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Bcl2l12Q9D3J3 255 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Tpcn1Q9EQJ0 817 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Cwc15Q9JHS9 229 aaKnown RBP18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Orc1Q9Z1N2 840 aaKnown RBP18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Myh2G3UW82 1942 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Sgsm1Q8BPQ7 1093 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Tspyl4Q8VD63 406 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Sh2b1Q91ZM2 756 aa18.25■□□□□ 0.51
Trim28-201ENSMUST00000005705 Myo1aO88329 1043 aa18.24■□□□□ 0.51
Trim28-201ENSMUST00000005705 Q3TYL0 343 aa18.24■□□□□ 0.51
Retrieved 100 of 22,080 RNA–protein pairs in 29.4 ms