RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZMYM6O95789 1325 aa19.3■□□□□ 0.68
TRIM28-213ENST00000598355 AKR1B1P15121 316 aa19.3■□□□□ 0.68
TRIM28-213ENST00000598355 RAB3GAP1Q15042 981 aa19.3■□□□□ 0.68
TRIM28-213ENST00000598355 FBXO46Q6PJ61 603 aaPredicted RBP19.3■□□□□ 0.68
TRIM28-213ENST00000598355 CCDC129Q6ZRS4 1044 aa19.3■□□□□ 0.68
TRIM28-213ENST00000598355 CPA4Q9UI42 421 aa19.3■□□□□ 0.68
TRIM28-213ENST00000598355 PLIN4Q96Q06 1357 aa19.3■□□□□ 0.68
TRIM28-213ENST00000598355 TRIM6-TRIM34B2RNG4 842 aa19.29■□□□□ 0.68
TRIM28-213ENST00000598355 GSPT1P15170 499 aaKnown RBP19.29■□□□□ 0.68
TRIM28-213ENST00000598355 RASA1P20936 1047 aa19.29■□□□□ 0.68
TRIM28-213ENST00000598355 TDO2P48775 406 aa19.29■□□□□ 0.68
TRIM28-213ENST00000598355 PABPC4Q13310 644 aaKnown RBP eCLIP19.29■□□□□ 0.681e-19■■□□□ 13.2
TRIM28-213ENST00000598355 USP17L2Q6R6M4 530 aa19.29■□□□□ 0.68
TRIM28-213ENST00000598355 ACER1Q8TDN7 264 aa19.29■□□□□ 0.68
TRIM28-213ENST00000598355 ASCC2Q9H1I8 757 aaPredicted RBP19.29■□□□□ 0.68
TRIM28-213ENST00000598355 TMOD4Q9NZQ9 345 aa19.29■□□□□ 0.68
TRIM28-213ENST00000598355 TRIM17Q9Y577 477 aa19.29■□□□□ 0.68
TRIM28-213ENST00000598355 PLXNB2O15031 1838 aa19.28■□□□□ 0.68
TRIM28-213ENST00000598355 A0A1W2PRG0 241 aa19.28■□□□□ 0.68
TRIM28-213ENST00000598355 SDSP20132 328 aa19.28■□□□□ 0.68
TRIM28-213ENST00000598355 CTGFP29279 349 aa19.28■□□□□ 0.68
TRIM28-213ENST00000598355 NMIQ13287 307 aaPredicted RBP19.28■□□□□ 0.68
TRIM28-213ENST00000598355 ALX1Q15699 326 aa19.28■□□□□ 0.68
TRIM28-213ENST00000598355 MCMDC2Q4G0Z9 681 aa19.28■□□□□ 0.68
TRIM28-213ENST00000598355 TTC22Q5TAA0 569 aa19.28■□□□□ 0.68
TRIM28-213ENST00000598355 VPS53Q5VIR6 699 aa19.28■□□□□ 0.68
TRIM28-213ENST00000598355 ZNF589Q86UQ0 364 aaPredicted RBP19.28■□□□□ 0.68
TRIM28-213ENST00000598355 SIAH1Q8IUQ4 282 aa19.28■□□□□ 0.68
TRIM28-213ENST00000598355 RILPL2Q969X0 211 aa19.28■□□□□ 0.68
TRIM28-213ENST00000598355 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.28■□□□□ 0.68
TRIM28-213ENST00000598355 NACAP1Q9BZK3 213 aa19.28■□□□□ 0.68
TRIM28-213ENST00000598355 USP14P54578 494 aa19.27■□□□□ 0.68
TRIM28-213ENST00000598355 FAM110CQ1W6H9 321 aa19.27■□□□□ 0.68
TRIM28-213ENST00000598355 ARHGAP39Q9C0H5 1083 aa19.27■□□□□ 0.68
TRIM28-213ENST00000598355 NAPBQ9H115 298 aa19.27■□□□□ 0.68
TRIM28-213ENST00000598355 EFCC1Q9HA90 598 aa19.27■□□□□ 0.68
TRIM28-213ENST00000598355 CCDC171Q6TFL3 1326 aa19.26■□□□□ 0.67
TRIM28-213ENST00000598355 GNRH1P01148 92 aa19.26■□□□□ 0.67
TRIM28-213ENST00000598355 VCAM1P19320 739 aa19.26■□□□□ 0.67
TRIM28-213ENST00000598355 GCLCP48506 637 aaPredicted RBP19.26■□□□□ 0.67
TRIM28-213ENST00000598355 ICA1Q05084 483 aa19.26■□□□□ 0.67
TRIM28-213ENST00000598355 CLEC10AQ8IUN9 316 aa19.26■□□□□ 0.67
TRIM28-213ENST00000598355 SMCR8Q8TEV9 937 aaPredicted RBP19.26■□□□□ 0.67
TRIM28-213ENST00000598355 FEZ1Q99689 392 aa19.26■□□□□ 0.67
TRIM28-213ENST00000598355 ANAPC4Q9UJX5 808 aa19.26■□□□□ 0.67
TRIM28-213ENST00000598355 HPS5Q9UPZ3 1129 aa19.26■□□□□ 0.67
TRIM28-213ENST00000598355 PTPN22Q9Y2R2 807 aa19.26■□□□□ 0.67
TRIM28-213ENST00000598355 IGKV6D-41A0A0C4DH26 115 aa19.25■□□□□ 0.67
TRIM28-213ENST00000598355 MINDY4BA8MYZ0 360 aa19.25■□□□□ 0.67
TRIM28-213ENST00000598355 MPHOSPH10O00566 681 aaKnown RBP19.25■□□□□ 0.67
TRIM28-213ENST00000598355 APPP05067 770 aa19.25■□□□□ 0.67
TRIM28-213ENST00000598355 PPARAQ07869 468 aa19.25■□□□□ 0.67
TRIM28-213ENST00000598355 ARHGEF6Q15052 776 aa19.25■□□□□ 0.67
TRIM28-213ENST00000598355 TRIM47Q96LD4 638 aa19.25■□□□□ 0.67
TRIM28-213ENST00000598355 MORF4L1Q9UBU8 362 aa19.25■□□□□ 0.67
TRIM28-213ENST00000598355 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.25■□□□□ 0.67
TRIM28-213ENST00000598355 TMX2Q9Y320 296 aa19.25■□□□□ 0.67
TRIM28-213ENST00000598355 COL11A1P12107 1806 aaPredicted RBP19.25■□□□□ 0.67
TRIM28-213ENST00000598355 HIP1O00291 1037 aa19.24■□□□□ 0.67
TRIM28-213ENST00000598355 HSPD1P10809 573 aaKnown RBP19.24■□□□□ 0.67
TRIM28-213ENST00000598355 OSBPP22059 807 aa19.24■□□□□ 0.67
TRIM28-213ENST00000598355 CENPQQ7L2Z9 268 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-213ENST00000598355 KANSL2Q9H9L4 492 aa19.24■□□□□ 0.67
TRIM28-213ENST00000598355 BRCA2P51587 3418 aa19.23■□□□□ 0.67
TRIM28-213ENST00000598355 HERVK_113P62684 666 aa19.23■□□□□ 0.67
TRIM28-213ENST00000598355 IRX3P78415 501 aaPredicted RBP19.23■□□□□ 0.67
TRIM28-213ENST00000598355 KIF22Q14807 665 aa19.23■□□□□ 0.67
TRIM28-213ENST00000598355 ZYXQ15942 572 aaKnown RBP19.23■□□□□ 0.67
TRIM28-213ENST00000598355 POTEEQ6S8J3 1075 aa19.23■□□□□ 0.67
TRIM28-213ENST00000598355 LBX2Q6XYB7 198 aa19.23■□□□□ 0.67
TRIM28-213ENST00000598355 LPAR1Q92633 364 aa19.23■□□□□ 0.67
TRIM28-213ENST00000598355 ZNF287Q9HBT7 754 aa19.23■□□□□ 0.67
TRIM28-213ENST00000598355 ARHGEF10LQ9HCE6 1279 aa19.23■□□□□ 0.67
TRIM28-213ENST00000598355 KIAA0100Q14667 2235 aaKnown RBP19.23■□□□□ 0.67
TRIM28-213ENST00000598355 FGRP09769 529 aa19.22■□□□□ 0.67
TRIM28-213ENST00000598355 PSMC4P43686 418 aa19.22■□□□□ 0.67
TRIM28-213ENST00000598355 PRMT2P55345 433 aa19.22■□□□□ 0.67
TRIM28-213ENST00000598355 KIAA1755Q5JYT7 1200 aa19.22■□□□□ 0.67
TRIM28-213ENST00000598355 CATSPERGQ6ZRH7 1159 aa19.22■□□□□ 0.67
TRIM28-213ENST00000598355 ANKRD13CQ8N6S4 541 aa19.22■□□□□ 0.67
TRIM28-213ENST00000598355 GTF3C2Q8WUA4 911 aaPredicted RBP19.22■□□□□ 0.67
TRIM28-213ENST00000598355 SH2D4AQ9H788 454 aa19.22■□□□□ 0.67
TRIM28-213ENST00000598355 VCPKMTQ9H867 229 aa19.22■□□□□ 0.67
TRIM28-213ENST00000598355 ZNF236Q9UL36 1845 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 USP17L15C9J2P7 530 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 USP17L13C9JLJ4 530 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 USP17L11C9JVI0 530 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 USP17L18D6R9N7 530 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 USP17L22D6RA61 530 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 USP17L17D6RBQ6 530 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 USP17L19D6RCP7 530 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 USP17L20D6RJB6 530 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 FGAP02671 866 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 EEF2P13639 858 aaKnown RBP19.21■□□□□ 0.67
TRIM28-213ENST00000598355 MFAP1P55081 439 aaKnown RBP19.21■□□□□ 0.67
TRIM28-213ENST00000598355 PDE4BQ07343 736 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 USP17L24Q0WX57 530 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 ARMC5Q96C12 935 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 P2RX7Q99572 595 aaKnown RBP19.21■□□□□ 0.67
TRIM28-213ENST00000598355 MKNK2Q9HBH9 465 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms