RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GDAQ9Y2T3 454 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 SLC4A4Q9Y6R1 1079 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 A0A087X0B3 334 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 ZFYP08048 801 aaPredicted RBP12.8□□□□□ -0.36
LDLR-208ENST00000558518 GGCXP38435 758 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 ERVK-24P63145 666 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 SND1Q7KZF4 910 aaKnown RBP eCLIP12.8□□□□□ -0.362e-7■■■□□ 16.9
LDLR-208ENST00000558518 SMCR8Q8TEV9 937 aaPredicted RBP12.8□□□□□ -0.36
LDLR-208ENST00000558518 MMS19Q96T76 1030 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 LRP2BPQ9P2M1 347 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 ANKARQ7Z5J8 1434 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 ATP1A1P05023 1023 aaKnown RBP12.79□□□□□ -0.36
LDLR-208ENST00000558518 PIP4K2BP78356 416 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 CNGA4Q8IV77 575 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 TECPR2O15040 1411 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 CYP2D7A0A087X1C5 515 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 TRIM21P19474 475 aaKnown RBP12.79□□□□□ -0.36
LDLR-208ENST00000558518 ITGA6P23229 1130 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 TBX2Q13207 712 aaPredicted RBP12.79□□□□□ -0.36
LDLR-208ENST00000558518 KRT31Q15323 416 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 SPATA1Q5VX52 437 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 NBPF3Q9H094 633 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 GREM2Q9H772 168 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 FBXO2Q9UK22 296 aaPredicted RBP12.79□□□□□ -0.36
LDLR-208ENST00000558518 DUSP10Q9Y6W6 482 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 NRXN3Q9Y4C0 1643 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 PDE6AP16499 860 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 FBXW10Q5XX13 1052 aa12.79□□□□□ -0.36
LDLR-208ENST00000558518 H7C1W4 665 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 MMP1P03956 469 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 IDEP14735 1019 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 MORC3Q14149 939 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 EARS2Q5JPH6 523 aaKnown RBP12.78□□□□□ -0.36
LDLR-208ENST00000558518 RNF187Q5TA31 235 aaPredicted RBP12.78□□□□□ -0.36
LDLR-208ENST00000558518 AEBP2Q6ZN18 517 aaPredicted RBP12.78□□□□□ -0.36
LDLR-208ENST00000558518 LY9Q9HBG7 655 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 JCADQ9P266 1359 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 PLEKHG1Q9ULL1 1385 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 GOLGA6CA6NDK9 693 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 POTEB2H3BUK9 544 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 GOLGA6DP0CG33 693 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 CCDC96Q2M329 555 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 RILPL1Q5EBL4 403 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 ICE2Q659A1 982 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 PIK3AP1Q6ZUJ8 805 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 BCAS4Q8TDM0 211 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 TRIM47Q96LD4 638 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 GOLGA6AQ9NYA3 693 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 JAG2Q9Y219 1238 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 RGPD1P0DJD0 1748 aa12.78□□□□□ -0.36
LDLR-208ENST00000558518 PTPREP23469 700 aa12.77□□□□□ -0.36
LDLR-208ENST00000558518 DPYDQ12882 1025 aa12.77□□□□□ -0.36
LDLR-208ENST00000558518 NELFBQ8WX92 580 aa12.77□□□□□ -0.36
LDLR-208ENST00000558518 PAGE5Q96GU1 130 aa12.77□□□□□ -0.36
LDLR-208ENST00000558518 EHD2Q9NZN4 543 aa12.77□□□□□ -0.36
LDLR-208ENST00000558518 EPN1Q9Y6I3 576 aaPredicted RBP12.77□□□□□ -0.36
LDLR-208ENST00000558518 WNT7AO00755 349 aa12.77□□□□□ -0.36
LDLR-208ENST00000558518 MAP2K7O14733 419 aa12.77□□□□□ -0.36
LDLR-208ENST00000558518 SSBP05455 408 aaKnown RBP eCLIP12.77□□□□□ -0.36
LDLR-208ENST00000558518 ZNF18P17022 549 aa12.77□□□□□ -0.36
LDLR-208ENST00000558518 FAM71BQ8TC56 605 aa12.77□□□□□ -0.36
LDLR-208ENST00000558518 WASF1Q92558 559 aa12.77□□□□□ -0.36
LDLR-208ENST00000558518 UIMC1Q96RL1 719 aa12.77□□□□□ -0.36
LDLR-208ENST00000558518 TRMT112Q9UI30 125 aaKnown RBP12.77□□□□□ -0.36
LDLR-208ENST00000558518 TTF2Q9UNY4 1162 aaKnown RBP12.77□□□□□ -0.36
LDLR-208ENST00000558518 NCAPD2Q15021 1401 aa12.77□□□□□ -0.37
LDLR-208ENST00000558518 KCNJ18B7U540 433 aa12.77□□□□□ -0.37
LDLR-208ENST00000558518 CUL4BQ13620 913 aa12.77□□□□□ -0.37
LDLR-208ENST00000558518 KCNJ12Q14500 433 aa12.77□□□□□ -0.37
LDLR-208ENST00000558518 CCDC181Q5TID7 509 aa12.77□□□□□ -0.37
LDLR-208ENST00000558518 CYP26C1Q6V0L0 522 aa12.77□□□□□ -0.37
LDLR-208ENST00000558518 IFNL3Q8IZI9 196 aa12.77□□□□□ -0.37
LDLR-208ENST00000558518 FAM76AQ8TAV0 307 aa12.77□□□□□ -0.37
LDLR-208ENST00000558518 CEP131Q9UPN4 1083 aa12.77□□□□□ -0.37
LDLR-208ENST00000558518 LUC7L2Q9Y383 392 aaKnown RBP12.77□□□□□ -0.37
LDLR-208ENST00000558518 SAR1BQ9Y6B6 198 aa12.77□□□□□ -0.37
LDLR-208ENST00000558518 A0A1B0GTH6 734 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 EZH2Q15910 746 aaKnown RBP12.76□□□□□ -0.37
LDLR-208ENST00000558518 RASGRP4Q8TDF6 673 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 IFT81Q8WYA0 676 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 JAKMIP2Q96AA8 810 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 ABHD10Q9NUJ1 306 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 ADD3Q9UEY8 706 aaKnown RBP12.76□□□□□ -0.37
LDLR-208ENST00000558518 RICTORQ6R327 1708 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 XBP1P17861 261 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 GNGT1P63211 74 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 ATP2B2Q01814 1243 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 PTGDRQ13258 359 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 MAP9Q49MG5 647 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 IGDCC4Q8TDY8 1250 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 PANX2Q96RD6 677 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 FAM217BQ9NTX9 383 aaPredicted RBP12.76□□□□□ -0.37
LDLR-208ENST00000558518 MAGEC2Q9UBF1 373 aaPredicted RBP12.76□□□□□ -0.37
LDLR-208ENST00000558518 DIP2BQ9P265 1576 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 GOLGA6BA6NDN3 693 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 MYBL2P10244 700 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 ADD2P35612 726 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 KLK7P49862 253 aa12.76□□□□□ -0.37
LDLR-208ENST00000558518 COPB1P53618 953 aaKnown RBP12.76□□□□□ -0.37
LDLR-208ENST00000558518 NLRP5P59047 1200 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms