RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 ARID5AQ03989 594 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 PPP2R3AQ06190 1150 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 SLC15A2Q16348 729 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 PPFIBP2Q8ND30 876 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 GTF3C2Q8WUA4 911 aaPredicted RBP8.71□□□□□ -1.02
VPS13D-211ENST00000543710 TEKT1Q969V4 418 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 AZI2Q9H6S1 392 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 UTP11Q9Y3A2 253 aaKnown RBP8.71□□□□□ -1.02
VPS13D-211ENST00000543710 RNF17Q9BXT8 1623 aaKnown RBP8.71□□□□□ -1.02
VPS13D-211ENST00000543710 MAP3K4Q9Y6R4 1608 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 FRMPD1Q5SYB0 1578 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 CPSF1Q10570 1443 aaKnown RBP8.71□□□□□ -1.02
VPS13D-211ENST00000543710 MYL1P05976 194 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 DEFB115Q30KQ5 88 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 SPECC1Q5M775 1068 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 AOPEPQ8N6M6 819 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 PLBD2Q8NHP8 589 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 PPP1R14CQ8TAE6 165 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 GTF3C6Q969F1 213 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 BAG1Q99933 345 aaPredicted RBP8.71□□□□□ -1.02
VPS13D-211ENST00000543710 CUEDC2Q9H467 287 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 KIF3CO14782 793 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 BUB1BO60566 1050 aaPredicted RBP8.7□□□□□ -1.02
VPS13D-211ENST00000543710 DNM2P50570 870 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 TPCN1Q9ULQ1 816 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 FRMD4BQ9Y2L6 1034 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 NBPF26B4DH59 902 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 PLEKHM2Q8IWE5 1019 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 TTC16Q8NEE8 873 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 CCDC113Q9H0I3 377 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 ANGEL1Q9UNK9 670 aaKnown RBP8.7□□□□□ -1.02
VPS13D-211ENST00000543710 ABCA9Q8IUA7 1624 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 LOC102724428A0A0B4J2F2 783 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 SIK1P57059 783 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 C9orf131Q5VYM1 1079 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 DTHD1Q6ZMT9 781 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 P3H4Q92791 437 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 GCNAQ96QF7 691 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 CCDC8Q9H0W5 538 aaPredicted RBP8.7□□□□□ -1.02
VPS13D-211ENST00000543710 VCXQ9H320 206 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 BCCIPQ9P287 314 aaKnown RBP eCLIP8.7□□□□□ -1.02
VPS13D-211ENST00000543710 EMILIN1Q9Y6C2 1016 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 IRS4O14654 1257 aaPredicted RBP8.7□□□□□ -1.02
VPS13D-211ENST00000543710 TNPO2O14787 897 aaKnown RBP8.7□□□□□ -1.02
VPS13D-211ENST00000543710 CELF2O95319 508 aaKnown RBP8.7□□□□□ -1.02
VPS13D-211ENST00000543710 ASIC2Q16515 512 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 CCDC42Q96M95 316 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 IWS1Q96ST2 819 aa8.7□□□□□ -1.02
VPS13D-211ENST00000543710 UBXN1Q04323 297 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 PAK2Q13177 524 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 LGSNQ5TDP6 509 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 NOX5Q96PH1 765 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 SPAG5Q96R06 1193 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 LUC7L2Q9Y383 392 aaKnown RBP8.69□□□□□ -1.02
VPS13D-211ENST00000543710 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.69□□□□□ -1.02
VPS13D-211ENST00000543710 GOLGA6CA6NDK9 693 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 GOLGA6BA6NDN3 693 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 ARHGAP6O43182 974 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 GOLGA6DP0CG33 693 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 COPB2P35606 906 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 RASSF2P50749 326 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 KLHL10Q6JEL2 608 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 NBPF10Q6P3W6 841 aaKnown RBP8.69□□□□□ -1.02
VPS13D-211ENST00000543710 MIS12Q9H081 205 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 GOLGA6AQ9NYA3 693 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 CD2APQ9Y5K6 639 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 ABCC4O15439 1325 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 SYNRGQ9UMZ2 1314 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 ZNF500O60304 480 aaPredicted RBP8.69□□□□□ -1.02
VPS13D-211ENST00000543710 IGSF3O75054 1194 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 ZNF75DP51815 510 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 NAPAP54920 295 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 FCGRTP55899 365 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 TGFB2P61812 414 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 C20orf194Q5TEA3 1177 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 SMARCC2Q8TAQ2 1214 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 RAB17Q9H0T7 212 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 MSRAQ9UJ68 235 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 EFCAB6Q5THR3 1501 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 PHLPP2Q6ZVD8 1323 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 ANKARQ7Z5J8 1434 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 LUC7L3O95232 432 aaKnown RBP8.69□□□□□ -1.02
VPS13D-211ENST00000543710 PARP1P09874 1014 aaKnown RBP8.69□□□□□ -1.02
VPS13D-211ENST00000543710 CALCOCO2Q13137 446 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 NUDT18Q6ZVK8 323 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 FASTKD5Q7L8L6 764 aaKnown RBP8.69□□□□□ -1.02
VPS13D-211ENST00000543710 HS2ST1Q7LGA3 356 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 OTUD6BQ8N6M0 293 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 ENGASEQ8NFI3 743 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 RASSF4Q9H2L5 321 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 GPR108Q9NPR9 543 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 NKIRAS1Q9NYS0 192 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 STIM2Q9P246 746 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 FEZ2Q9UHY8 353 aaPredicted RBP8.69□□□□□ -1.02
VPS13D-211ENST00000543710 CEP152O94986 1710 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 RNMTO43148 476 aaKnown RBP8.69□□□□□ -1.02
VPS13D-211ENST00000543710 CCDC6Q16204 474 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 CCDC184Q52MB2 194 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 PHLDB2Q86SQ0 1253 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 BICD1Q96G01 975 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms