RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 CCDC13Q8IYE1 715 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 ICA1LQ8NDH6 482 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 NAPBQ9H115 298 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 TRPA1O75762 1119 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 MCM7P33993 719 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 ZNF445P59923 1031 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 CDR2Q01850 454 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 INAQ16352 499 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 KLHL29Q96CT2 875 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 NUTM2BA6NNL0 878 aaPredicted RBP6.79□□□□□ -1.32
VCAN-203ENST00000343200 NUTM2EB1AL46 878 aaPredicted RBP6.79□□□□□ -1.32
VCAN-203ENST00000343200 KRT14P02533 472 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 HOOK2Q96ED9 719 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 RUNDC3BQ96NL0 473 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 MBD2Q9UBB5 411 aa6.79□□□□□ -1.32
VCAN-203ENST00000343200 ERCC6Q03468 1493 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 THAP12O43422 761 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 DAB1O75553 588 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 SMC5Q8IY18 1101 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 HAUS7Q99871 368 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 ABCA1O95477 2261 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 BRAPQ7Z569 592 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 CCDC82Q8N4S0 544 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 GAS2L2Q8NHY3 880 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 KIFC2Q96AC6 838 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 INTS4Q96HW7 963 aaKnown RBP6.78□□□□□ -1.32
VCAN-203ENST00000343200 ASIC3Q9UHC3 531 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 DNAJC13O75165 2243 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 DCTN3O75935 186 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 ZNF75DP51815 510 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 KRR1Q13601 381 aaKnown RBP6.78□□□□□ -1.32
VCAN-203ENST00000343200 JADE1Q6IE81 842 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 HORMAD1Q86X24 394 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 TMTC1Q8IUR5 882 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 TRIM42Q8IWZ5 723 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 SESTD1Q86VW0 696 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 PNISRQ8TF01 805 aaKnown RBP6.78□□□□□ -1.32
VCAN-203ENST00000343200 SH3GL1Q99961 368 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 NUP58Q9BVL2 599 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 SMARCA4P51532 1647 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 NBNO60934 754 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 BCAR3O75815 825 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 C4BPBP20851 252 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 F13A1P00488 732 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 GNAT2P19087 354 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 USP5P45974 858 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 METAP2P50579 478 aaKnown RBP eCLIP6.78□□□□□ -1.32
VCAN-203ENST00000343200 MPP4Q96JB8 637 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 NCAPD3P42695 1498 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 hCG_2014768A0A024R1R8 64 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 SPOPO43791 374 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 AP2B1P63010 937 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 MUM1L1Q5H9M0 696 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 ZCRB1Q8TBF4 217 aaKnown RBP6.78□□□□□ -1.32
VCAN-203ENST00000343200 LRRC8CQ8TDW0 803 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 STAMBPL1Q96FJ0 436 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 RAPGEF2Q9Y4G8 1499 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 TCP11L2Q8N4U5 519 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 ACRBPQ8NEB7 543 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 CATSPER1Q8NEC5 780 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.78□□□□□ -1.32
VCAN-203ENST00000343200 LZICQ8WZA0 190 aa6.78□□□□□ -1.32
VCAN-203ENST00000343200 EIF3CLB5ME19 914 aaKnown RBP6.77□□□□□ -1.33
VCAN-203ENST00000343200 DKC1O60832 514 aaKnown RBP eCLIP6.77□□□□□ -1.33
VCAN-203ENST00000343200 SPAG7O75391 227 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 SERPINB1P30740 379 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 MYL5Q02045 173 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 CYLC2Q14093 348 aaPredicted RBP6.77□□□□□ -1.33
VCAN-203ENST00000343200 TTLL11Q8NHH1 800 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 EIF3CQ99613 913 aaKnown RBP6.77□□□□□ -1.33
VCAN-203ENST00000343200 TTC1Q99614 292 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 HELLSQ9NRZ9 838 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 DACT1Q9NYF0 836 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.77□□□□□ -1.33
VCAN-203ENST00000343200 MYOM3Q5VTT5 1437 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 PRR23D1E9PI22 279 aaPredicted RBP6.77□□□□□ -1.33
VCAN-203ENST00000343200 DEAF1O75398 565 aaPredicted RBP6.77□□□□□ -1.33
VCAN-203ENST00000343200 HMOX1P09601 288 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 PRR23D2P0DMB1 279 aaPredicted RBP6.77□□□□□ -1.33
VCAN-203ENST00000343200 DRP2Q13474 957 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 CEP55Q53EZ4 464 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 HSP90AA4PQ58FG1 418 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 AEBP2Q6ZN18 517 aaPredicted RBP6.77□□□□□ -1.33
VCAN-203ENST00000343200 MCM10Q7L590 875 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 FCHSD1Q86WN1 690 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 ZBTB9Q96C00 473 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 YIPF3Q9GZM5 350 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 AMOTL2Q9Y2J4 779 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 PHLPP2Q6ZVD8 1323 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 CARSP49589 748 aaKnown RBP6.77□□□□□ -1.33
VCAN-203ENST00000343200 ALS2CLQ60I27 953 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 MRPS26Q9BYN8 205 aaKnown RBP6.77□□□□□ -1.33
VCAN-203ENST00000343200 CD2APQ9Y5K6 639 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 EFCAB5A4FU69 1503 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 FGD6Q6ZV73 1430 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 GTPBP10A4D1E9 387 aaKnown RBP6.77□□□□□ -1.33
VCAN-203ENST00000343200 TSPAN9O75954 239 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 POLR3DP05423 398 aaPredicted RBP6.77□□□□□ -1.33
VCAN-203ENST00000343200 PRKG1Q13976 671 aa6.77□□□□□ -1.33
VCAN-203ENST00000343200 PODNQ7Z5L7 613 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms