RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 KRT2P35908 639 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 TFAP4Q01664 338 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 SH3RF3Q8TEJ3 882 aaPredicted RBP11.86□□□□□ -0.51
LIMA1-201ENST00000341247 TGFBRAP1Q8WUH2 860 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 GJD4Q96KN9 370 aaPredicted RBP11.86□□□□□ -0.51
LIMA1-201ENST00000341247 RNF26Q9BY78 433 aaPredicted RBP11.86□□□□□ -0.51
LIMA1-201ENST00000341247 USP17L3A6NCW0 530 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 USP17L4A6NCW7 530 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 SMTNL1A8MU46 457 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 COBLO75128 1261 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 LDHBP07195 334 aaKnown RBP11.85□□□□□ -0.51
LIMA1-201ENST00000341247 PTPREP23469 700 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 KLHL10Q6JEL2 608 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 RASGRP2Q7LDG7 609 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 USP17L1Q7RTZ2 530 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 MAPKAPK5Q8IW41 473 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 GPKOWQ92917 476 aaPredicted RBP eCLIP11.85□□□□□ -0.51
LIMA1-201ENST00000341247 TRIM75PA6NK02 468 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 CCZ1BP86790 482 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 CCZ1P86791 482 aaPredicted RBP11.85□□□□□ -0.51
LIMA1-201ENST00000341247 PIK3AP1Q6ZUJ8 805 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 RASGRP4Q8TDF6 673 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 CPVLQ9H3G5 476 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.85□□□□□ -0.51
LIMA1-201ENST00000341247 TMEM232C9JQI7 657 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 UBASH3AP57075 661 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 NLRP5P59047 1200 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 NAA30Q147X3 362 aaPredicted RBP11.85□□□□□ -0.51
LIMA1-201ENST00000341247 POSTNQ15063 836 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 TIGD1Q96MW7 591 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 MKNK2Q9HBH9 465 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 TUBE1Q9UJT0 475 aa11.85□□□□□ -0.51
LIMA1-201ENST00000341247 AFF2P51816 1311 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 VWA3AA6NCI4 1184 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 FUT2Q10981 343 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 RC3H1Q5TC82 1133 aaKnown RBP11.84□□□□□ -0.51
LIMA1-201ENST00000341247 ARMCX5Q6P1M9 558 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 MAN1B1Q9UKM7 699 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 CDC25AP30304 524 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 MCM7P33993 719 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 STX17P56962 302 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 MYL5Q02045 173 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 TMTC3Q6ZXV5 915 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 STAG2Q8N3U4 1231 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 RPGRQ92834 1020 aaKnown RBP11.84□□□□□ -0.51
LIMA1-201ENST00000341247 HSD3B7Q9H2F3 369 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 STX8Q9UNK0 236 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 A0A087X0B3 334 aa11.84□□□□□ -0.51
LIMA1-201ENST00000341247 CDK11BP21127 795 aaKnown RBP11.84□□□□□ -0.51
LIMA1-201ENST00000341247 SMYD4Q8IYR2 804 aaPredicted RBP11.84□□□□□ -0.51
LIMA1-201ENST00000341247 PRPF3O43395 683 aaKnown RBP11.83□□□□□ -0.52
LIMA1-201ENST00000341247 UFL1O94874 794 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 GOLGA8HP0CJ92 632 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 SFPQP23246 707 aaKnown RBP eCLIP11.83□□□□□ -0.52
LIMA1-201ENST00000341247 FMR1Q06787 632 aaKnown RBP eCLIP11.83□□□□□ -0.52
LIMA1-201ENST00000341247 SEPT12Q8IYM1 358 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 SMARCE1Q969G3 411 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 PHF20Q9BVI0 1012 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 CREBRFQ8IUR6 639 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 SYMPKQ92797 1274 aaKnown RBP11.83□□□□□ -0.52
LIMA1-201ENST00000341247 KAT14Q9H8E8 782 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.83□□□□□ -0.52
LIMA1-201ENST00000341247 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.83□□□□□ -0.52
LIMA1-201ENST00000341247 V9GYY5 206 aaPredicted RBP11.83□□□□□ -0.52
LIMA1-201ENST00000341247 SEMA3EO15041 775 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 PLCD1P51178 756 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 ZNF710Q8N1W2 664 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 PROM2Q8N271 834 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 BRMS1Q9HCU9 246 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 ATP8A2Q9NTI2 1148 aa11.83□□□□□ -0.52
LIMA1-201ENST00000341247 SRPRBQ9Y5M8 271 aaKnown RBP11.83□□□□□ -0.52
LIMA1-201ENST00000341247 CNTNAP5Q8WYK1 1306 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 F8W031 263 aaPredicted RBP11.82□□□□□ -0.52
LIMA1-201ENST00000341247 GPSM2P81274 684 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 GRAPQ13588 217 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 CEP135Q66GS9 1140 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 GRAPLQ8TC17 118 aaPredicted RBP11.82□□□□□ -0.52
LIMA1-201ENST00000341247 RBM28Q9NW13 759 aaKnown RBP11.82□□□□□ -0.52
LIMA1-201ENST00000341247 CEP131Q9UPN4 1083 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 PTGDRQ13258 359 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 PTPN14Q15678 1187 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 TTC38Q5R3I4 469 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 PRR5LQ6MZQ0 368 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 BPIFA3Q9BQP9 254 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 IL17RBQ9NRM6 502 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 ARPP21Q9UBL0 812 aaPredicted RBP11.82□□□□□ -0.52
LIMA1-201ENST00000341247 BRWD3Q6RI45 1802 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 UBR3Q6ZT12 1888 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 MDM2Q00987 491 aaPredicted RBP11.82□□□□□ -0.52
LIMA1-201ENST00000341247 BLZF1Q9H2G9 400 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 PDCL3Q9H2J4 239 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 NFE2L3Q9Y4A8 694 aa11.82□□□□□ -0.52
LIMA1-201ENST00000341247 RIMBP2O15034 1052 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 TSPY3P0CV98 308 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 TSPY8P0CW00 308 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 SCG2P13521 617 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 RCSD1Q6JBY9 416 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 PNMA1Q8ND90 353 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 MTA3Q9BTC8 594 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 DUOX1Q9NRD9 1551 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms