RNA–Protein interactions for RNA: ENSMUST00000171404.7

Gtf3c4-204, Transcript of General transcription factor 3C polypeptide 4, mousemouse

TSL 1 (best) BASIC

Gene Gtf3c4, Length 7,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Gtf3c4-204ENSMUST00000171404 Sprr2dO70555 85 aa4.67□□□□□ -1.66
Gtf3c4-204ENSMUST00000171404 Lce1a1Q9CQH5 143 aa4.64□□□□□ -1.67
Gtf3c4-204ENSMUST00000171404 Lce1kJ3QP15 125 aa4.64□□□□□ -1.67
Gtf3c4-204ENSMUST00000171404 Krtap4-16Q91W93 202 aa4.55□□□□□ -1.68
Gtf3c4-204ENSMUST00000171404 Gm11938Q9D3H4 131 aa4.54□□□□□ -1.68
Gtf3c4-204ENSMUST00000171404 Herc1E9PZP8 4859 aa4.53□□□□□ -1.68
Gtf3c4-204ENSMUST00000171404 PcloQ9QYX7 5068 aa4.52□□□□□ -1.69
Gtf3c4-204ENSMUST00000171404 Gm11554B1AQB2 190 aa4.45□□□□□ -1.7
Gtf3c4-204ENSMUST00000171404 Mt3P28184 68 aa4.43□□□□□ -1.7
Gtf3c4-204ENSMUST00000171404 Sprr2bO70554 98 aa4.41□□□□□ -1.7
Gtf3c4-204ENSMUST00000171404 Krtap6-3A0A087WQL6 57 aa4.39□□□□□ -1.71
Gtf3c4-204ENSMUST00000171404 HydinQ80W93 5154 aa4.37□□□□□ -1.71
Gtf3c4-204ENSMUST00000171404 Kiaa1109A2AAE1 5005 aa4.36□□□□□ -1.71
Gtf3c4-204ENSMUST00000171404 Fsip2A2ARZ3 6995 aa4.35□□□□□ -1.71
Gtf3c4-204ENSMUST00000171404 Syne2Q6ZWQ0 6874 aaKnown RBP4.33□□□□□ -1.72
Gtf3c4-204ENSMUST00000171404 Hmcn2A2AJ76 5100 aa4.31□□□□□ -1.72
Gtf3c4-204ENSMUST00000171404 Birc6O88738 4882 aa4.28□□□□□ -1.72
Gtf3c4-204ENSMUST00000171404 ZanO88799 5376 aa4.18□□□□□ -1.74
Gtf3c4-204ENSMUST00000171404 Muc5bE9Q5I3 4800 aa4.16□□□□□ -1.74
Gtf3c4-204ENSMUST00000171404 4932415D10RikA0A1W2P6U8 4986 aa4.15□□□□□ -1.75
Gtf3c4-204ENSMUST00000171404 Mdn1A2ANY6 5589 aaKnown RBP4.15□□□□□ -1.75
Gtf3c4-204ENSMUST00000171404 Krtap20-2E9Q0A8 60 aa4.04□□□□□ -1.76
Gtf3c4-204ENSMUST00000171404 Abca13Q5SSE9 5034 aa4.03□□□□□ -1.76
Gtf3c4-204ENSMUST00000171404 Fat4Q2PZL6 4981 aa4.01□□□□□ -1.77
Gtf3c4-204ENSMUST00000171404 Ubr4A2AN08 5180 aa3.96□□□□□ -1.78
Gtf3c4-204ENSMUST00000171404 Mt1P02802 61 aaKnown RBP3.96□□□□□ -1.78
Gtf3c4-204ENSMUST00000171404 Krtap31-2Q8CAY5 177 aa3.9□□□□□ -1.78
Gtf3c4-204ENSMUST00000171404 Rnf213E9Q555 5152 aaKnown RBP3.68□□□□□ -1.82
Gtf3c4-204ENSMUST00000171404 Ush2AQ2QI47 5193 aa3.66□□□□□ -1.82
Gtf3c4-204ENSMUST00000171404 Syne1Q6ZWR6 8799 aa3.65□□□□□ -1.82
Gtf3c4-204ENSMUST00000171404 SspoQ8CG65 4998 aa3.6□□□□□ -1.83
Gtf3c4-204ENSMUST00000171404 Gm11555B1AQ89 175 aa3.5□□□□□ -1.85
Gtf3c4-204ENSMUST00000171404 Eppk1Q8R0W0 6548 aa3.24□□□□□ -1.89
Gtf3c4-204ENSMUST00000171404 1110025L11RikO09048 78 aa3.24□□□□□ -1.89
Gtf3c4-204ENSMUST00000171404 Krtap6-5Q925H3 78 aa3.24□□□□□ -1.89
Gtf3c4-204ENSMUST00000171404 Gm11559Q9D3H7 191 aa3.17□□□□□ -1.9
Gtf3c4-204ENSMUST00000171404 Gm10229O08631 77 aa3.15□□□□□ -1.9
Gtf3c4-204ENSMUST00000171404 NebE9Q1W3 7152 aa3.14□□□□□ -1.91
Gtf3c4-204ENSMUST00000171404 Phgr1Q8K0G7 91 aa3.11□□□□□ -1.91
Gtf3c4-204ENSMUST00000171404 DstQ91ZU6 7393 aaKnown RBP3.11□□□□□ -1.91
Gtf3c4-204ENSMUST00000171404 ObscnA2AAJ9 8891 aaKnown RBP2.98□□□□□ -1.93
Gtf3c4-204ENSMUST00000171404 Muc16A0A140LJ72 8478 aa2.97□□□□□ -1.93
Gtf3c4-204ENSMUST00000171404 Gm11568A2A4M2 211 aa2.97□□□□□ -1.93
Gtf3c4-204ENSMUST00000171404 Krtap9-1Q64526 186 aa2.97□□□□□ -1.93
Gtf3c4-204ENSMUST00000171404 Macf1Q9QXZ0 7354 aaKnown RBP2.95□□□□□ -1.94
Gtf3c4-204ENSMUST00000171404 Muc19Q6PZE0 7524 aa2.79□□□□□ -1.96
Gtf3c4-204ENSMUST00000171404 Kmt2dQ6PDK2 5588 aa2.69□□□□□ -1.98
Gtf3c4-204ENSMUST00000171404 Krtap6-2O08884 159 aa2.46□□□□□ -2.02
Gtf3c4-204ENSMUST00000171404 Krtap5-2Q9D5Z7 189 aa2.42□□□□□ -2.02
Gtf3c4-204ENSMUST00000171404 Gm11567Q9D141 195 aa2.39□□□□□ -2.03
Gtf3c4-204ENSMUST00000171404 Gm4553A0A1B0GSA9 284 aa2.31□□□□□ -2.04
Gtf3c4-204ENSMUST00000171404 Gm2431E9Q8S1 172 aa2.26□□□□□ -2.05
Gtf3c4-204ENSMUST00000171404 Krtap21-1Q925H4 128 aa2.23□□□□□ -2.05
Gtf3c4-204ENSMUST00000171404 A030005L19RikA0A1Y7VIU2 113 aa2.16□□□□□ -2.06
Gtf3c4-204ENSMUST00000171404 Gm11639A0A1D5RLM8 5808 aa2.06□□□□□ -2.08
Gtf3c4-204ENSMUST00000171404 Gpr98Q8VHN7 6298 aaKnown RBP2.05□□□□□ -2.08
Gtf3c4-204ENSMUST00000171404 Hmcn1D3YXG0 5634 aa2.01□□□□□ -2.09
Gtf3c4-204ENSMUST00000171404 Gm10153A0A1B0GRL1 320 aa1.92□□□□□ -2.1
Gtf3c4-204ENSMUST00000171404 A0A1Y7VLE6 161 aa1.91□□□□□ -2.1
Gtf3c4-204ENSMUST00000171404 Gm45337A0A1B0GS71 263 aa1.83□□□□□ -2.12
Gtf3c4-204ENSMUST00000171404 AhnakE9Q616 5656 aaKnown RBP1.77□□□□□ -2.13
Gtf3c4-204ENSMUST00000171404 Gm40460A0A1B0GR10 244 aa1.75□□□□□ -2.13
Gtf3c4-204ENSMUST00000171404 Gm7579A0A1B0GRJ4 243 aa1.75□□□□□ -2.13
Gtf3c4-204ENSMUST00000171404 Gm39115A0A1B0GSH7 232 aa1.75□□□□□ -2.13
Gtf3c4-204ENSMUST00000171404 Krtap5-5Q2TA51 241 aa1.75□□□□□ -2.13
Gtf3c4-204ENSMUST00000171404 Krtap5-4Q62220 223 aa1.75□□□□□ -2.13
Gtf3c4-204ENSMUST00000171404 A030003K21RikA0A1Y7VIM3 128 aa1.71□□□□□ -2.14
Gtf3c4-204ENSMUST00000171404 A0A1Y7VJH8 109 aa1.65□□□□□ -2.15
Gtf3c4-204ENSMUST00000171404 Gm7544A0A1Y7VJ58 118 aa1.65□□□□□ -2.15
Gtf3c4-204ENSMUST00000171404 Krtap28-10A0A1Y7VP58 119 aa1.61□□□□□ -2.15
Gtf3c4-204ENSMUST00000171404 Gm6217A0A1Y7VJK9 128 aa1.61□□□□□ -2.15
Gtf3c4-204ENSMUST00000171404 A030005K14RikA0A1Y7VNY1 122 aa1.52□□□□□ -2.17
Gtf3c4-204ENSMUST00000171404 Krtap5-1Q64507 230 aa1.5□□□□□ -2.17
Gtf3c4-204ENSMUST00000171404 Krtap28-13A0A087WQP5 138 aa1.47□□□□□ -2.17
Gtf3c4-204ENSMUST00000171404 Gm45618A0A1B0GSA0 219 aa1.42□□□□□ -2.18
Gtf3c4-204ENSMUST00000171404 A0A1Y7VJ07 166 aa1.39□□□□□ -2.19
Gtf3c4-204ENSMUST00000171404 A0A286YCP9 139 aa1.31□□□□□ -2.2
Gtf3c4-204ENSMUST00000171404 Gm29735A0A1B0GT06 219 aa1.27□□□□□ -2.21
Gtf3c4-204ENSMUST00000171404 A030014E15RikA0A1Y7VJV2 120 aa1.26□□□□□ -2.21
Gtf3c4-204ENSMUST00000171404 Gm4559A4IF42 199 aa0.78□□□□□ -2.28
Retrieved 80 of 22,080 RNA–protein pairs in 116.7 ms