RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Krtap4-1Q3UUY3 169 aa3.28□□□□□ -1.88
Trim56-201ENSMUST00000054384 Krtap4-16Q91W93 202 aa3.28□□□□□ -1.88
Trim56-201ENSMUST00000054384 Lce1kJ3QP15 125 aa3.25□□□□□ -1.89
Trim56-201ENSMUST00000054384 Gm11596B1AQB0 205 aa3.24□□□□□ -1.89
Trim56-201ENSMUST00000054384 Gm11564A2A4L9 201 aa3.22□□□□□ -1.89
Trim56-201ENSMUST00000054384 Gm11563B1AQ90 168 aa3.22□□□□□ -1.89
Trim56-201ENSMUST00000054384 Gm11595B1AQA7 289 aa3.22□□□□□ -1.89
Trim56-201ENSMUST00000054384 Krtap4-8B1AQA8 209 aa3.22□□□□□ -1.89
Trim56-201ENSMUST00000054384 Lce1a1Q9CQH5 143 aa3.2□□□□□ -1.9
Trim56-201ENSMUST00000054384 Krtap4-9B1AQA9 244 aa3.19□□□□□ -1.9
Trim56-201ENSMUST00000054384 Sprr2bO70554 98 aa3.17□□□□□ -1.9
Trim56-201ENSMUST00000054384 4932415D10RikA0A1W2P6U8 4986 aa3.16□□□□□ -1.9
Trim56-201ENSMUST00000054384 Krtap4-13Q9D7P3 165 aa3.15□□□□□ -1.9
Trim56-201ENSMUST00000054384 ZanO88799 5376 aa3.15□□□□□ -1.91
Trim56-201ENSMUST00000054384 Abca13Q5SSE9 5034 aa3.11□□□□□ -1.91
Trim56-201ENSMUST00000054384 Ubr4A2AN08 5180 aa3.11□□□□□ -1.91
Trim56-201ENSMUST00000054384 Fat4Q2PZL6 4981 aa3.02□□□□□ -1.93
Trim56-201ENSMUST00000054384 Mt1P02802 61 aaKnown RBP2.99□□□□□ -1.93
Trim56-201ENSMUST00000054384 Syne2Q6ZWQ0 6874 aaKnown RBP2.96□□□□□ -1.94
Trim56-201ENSMUST00000054384 Krtap17-1A2A5X6 109 aa2.95□□□□□ -1.94
Trim56-201ENSMUST00000054384 Mdn1A2ANY6 5589 aaKnown RBP2.94□□□□□ -1.94
Trim56-201ENSMUST00000054384 Syne1Q6ZWR6 8799 aa2.92□□□□□ -1.94
Trim56-201ENSMUST00000054384 Muc5bE9Q5I3 4800 aa2.89□□□□□ -1.95
Trim56-201ENSMUST00000054384 Krtap6-3A0A087WQL6 57 aa2.88□□□□□ -1.95
Trim56-201ENSMUST00000054384 Gm11554B1AQB2 190 aa2.88□□□□□ -1.95
Trim56-201ENSMUST00000054384 Ush2AQ2QI47 5193 aa2.87□□□□□ -1.95
Trim56-201ENSMUST00000054384 Hmcn2A2AJ76 5100 aa2.85□□□□□ -1.95
Trim56-201ENSMUST00000054384 Rnf213E9Q555 5152 aaKnown RBP2.82□□□□□ -1.96
Trim56-201ENSMUST00000054384 Fsip2A2ARZ3 6995 aa2.7□□□□□ -1.98
Trim56-201ENSMUST00000054384 Krtap20-2E9Q0A8 60 aa2.69□□□□□ -1.98
Trim56-201ENSMUST00000054384 A0A1Y7VLE6 161 aa2.64□□□□□ -1.99
Trim56-201ENSMUST00000054384 SspoQ8CG65 4998 aa2.64□□□□□ -1.99
Trim56-201ENSMUST00000054384 ObscnA2AAJ9 8891 aaKnown RBP2.62□□□□□ -1.99
Trim56-201ENSMUST00000054384 A030003K21RikA0A1Y7VIM3 128 aa2.49□□□□□ -2.01
Trim56-201ENSMUST00000054384 1110025L11RikO09048 78 aa2.47□□□□□ -2.01
Trim56-201ENSMUST00000054384 Krtap6-5Q925H3 78 aa2.47□□□□□ -2.01
Trim56-201ENSMUST00000054384 Gm10229O08631 77 aa2.4□□□□□ -2.02
Trim56-201ENSMUST00000054384 Gm6217A0A1Y7VJK9 128 aa2.33□□□□□ -2.04
Trim56-201ENSMUST00000054384 Phgr1Q8K0G7 91 aa2.32□□□□□ -2.04
Trim56-201ENSMUST00000054384 Muc16A0A140LJ72 8478 aa2.28□□□□□ -2.05
Trim56-201ENSMUST00000054384 Macf1Q9QXZ0 7354 aaKnown RBP2.25□□□□□ -2.05
Trim56-201ENSMUST00000054384 Gm11555B1AQ89 175 aa2.24□□□□□ -2.05
Trim56-201ENSMUST00000054384 Krtap28-10A0A1Y7VP58 119 aa2.2□□□□□ -2.06
Trim56-201ENSMUST00000054384 DstQ91ZU6 7393 aaKnown RBP2.2□□□□□ -2.06
Trim56-201ENSMUST00000054384 Eppk1Q8R0W0 6548 aa2.15□□□□□ -2.07
Trim56-201ENSMUST00000054384 Kmt2dQ6PDK2 5588 aa2.12□□□□□ -2.07
Trim56-201ENSMUST00000054384 A030005K14RikA0A1Y7VNY1 122 aa2.1□□□□□ -2.07
Trim56-201ENSMUST00000054384 A030005L19RikA0A1Y7VIU2 113 aa2.08□□□□□ -2.08
Trim56-201ENSMUST00000054384 Gm11559Q9D3H7 191 aa2.08□□□□□ -2.08
Trim56-201ENSMUST00000054384 Krtap28-13A0A087WQP5 138 aa2.05□□□□□ -2.08
Trim56-201ENSMUST00000054384 Gm11568A2A4M2 211 aa2.03□□□□□ -2.08
Trim56-201ENSMUST00000054384 Krtap9-1Q64526 186 aa2.03□□□□□ -2.08
Trim56-201ENSMUST00000054384 NebE9Q1W3 7152 aa2.02□□□□□ -2.09
Trim56-201ENSMUST00000054384 Gm11639A0A1D5RLM8 5808 aa1.99□□□□□ -2.09
Trim56-201ENSMUST00000054384 A0A1Y7VJ07 166 aa1.98□□□□□ -2.09
Trim56-201ENSMUST00000054384 Gm7544A0A1Y7VJ58 118 aa1.96□□□□□ -2.1
Trim56-201ENSMUST00000054384 Gpr98Q8VHN7 6298 aaKnown RBP1.93□□□□□ -2.1
Trim56-201ENSMUST00000054384 Gm11567Q9D141 195 aa1.89□□□□□ -2.11
Trim56-201ENSMUST00000054384 A0A1Y7VJH8 109 aa1.88□□□□□ -2.11
Trim56-201ENSMUST00000054384 Muc19Q6PZE0 7524 aa1.88□□□□□ -2.11
Trim56-201ENSMUST00000054384 Krtap6-2O08884 159 aa1.87□□□□□ -2.11
Trim56-201ENSMUST00000054384 Krtap5-2Q9D5Z7 189 aa1.85□□□□□ -2.11
Trim56-201ENSMUST00000054384 A030014E15RikA0A1Y7VJV2 120 aa1.78□□□□□ -2.13
Trim56-201ENSMUST00000054384 Hmcn1D3YXG0 5634 aa1.78□□□□□ -2.13
Trim56-201ENSMUST00000054384 Krtap21-1Q925H4 128 aa1.68□□□□□ -2.14
Trim56-201ENSMUST00000054384 Gm4553A0A1B0GSA9 284 aa1.67□□□□□ -2.14
Trim56-201ENSMUST00000054384 AhnakE9Q616 5656 aaKnown RBP1.64□□□□□ -2.15
Trim56-201ENSMUST00000054384 Gm10153A0A1B0GRL1 320 aa1.63□□□□□ -2.15
Trim56-201ENSMUST00000054384 A0A286YCP9 139 aa1.56□□□□□ -2.16
Trim56-201ENSMUST00000054384 Gm2431E9Q8S1 172 aa1.52□□□□□ -2.17
Trim56-201ENSMUST00000054384 Gm45337A0A1B0GS71 263 aa1.5□□□□□ -2.17
Trim56-201ENSMUST00000054384 Gm40460A0A1B0GR10 244 aa1.5□□□□□ -2.17
Trim56-201ENSMUST00000054384 Gm7579A0A1B0GRJ4 243 aa1.5□□□□□ -2.17
Trim56-201ENSMUST00000054384 Krtap5-5Q2TA51 241 aa1.5□□□□□ -2.17
Trim56-201ENSMUST00000054384 Krtap5-4Q62220 223 aa1.5□□□□□ -2.17
Trim56-201ENSMUST00000054384 Gm39115A0A1B0GSH7 232 aa1.42□□□□□ -2.18
Trim56-201ENSMUST00000054384 Gm29735A0A1B0GT06 219 aa1.22□□□□□ -2.21
Trim56-201ENSMUST00000054384 Gm45618A0A1B0GSA0 219 aa1.2□□□□□ -2.22
Trim56-201ENSMUST00000054384 Krtap5-1Q64507 230 aa0.89□□□□□ -2.27
Trim56-201ENSMUST00000054384 Gm4559A4IF42 199 aa0.63□□□□□ -2.31
Retrieved 80 of 22,080 RNA–protein pairs in 102.3 ms