RNA–Protein interactions for RNA: YOR054C

VHS3, Transcript of Negative regulatory subunit of protein phosphatase 1 Ppz1p, yeast

Gene VHS3, Length 2,025 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHS3	YOR054C	YER189W	P40104	122 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	UBP7	P40453	1071 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	YFL064C	P43540	174 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	DAK2	P43550	591 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	YJR008W	P47085	338 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	NNF1	P47149	201 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	RAD17	P48581	401 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	DAK1	P54838	584 aa	Known RBP	4.16	□□□□□ -1.74
VHS3	YOR054C	RSC4	Q02206	625 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	YPR196W	Q06595	470 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	YPR078C	Q06813	372 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	MCH5	Q08777	521 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	RTC5	Q12108	567 aa	Known RBP	4.16	□□□□□ -1.74
VHS3	YOR054C	FMP16	Q12497	93 aa		4.16	□□□□□ -1.74
VHS3	YOR054C	URA3	P03962	267 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	GLN4	P13188	809 aa	Known RBP	4.15	□□□□□ -1.75
VHS3	YOR054C	HEM15	P16622	393 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	ALG1	P16661	449 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	SEC18	P18759	758 aa	Known RBP	4.15	□□□□□ -1.75
VHS3	YOR054C	SNT1	P25357	1226 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	AAD3	P25612	363 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	MCM5	P29496	775 aa	Known RBP	4.15	□□□□□ -1.75
VHS3	YOR054C	TFC1	P32367	649 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	SIP2	P34164	415 aa	Known RBP	4.15	□□□□□ -1.75
VHS3	YOR054C	ATG19	P35193	415 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	NAT2	P37293	288 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	VHC1	P38329	1120 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	MMS21	P38632	267 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	MBP1	P39678	833 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	PRK1	P40494	810 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	YJL107C	P42947	387 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	FET5	P43561	622 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	NCS6	P53088	359 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	PEF1	P53238	335 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	FDC1	Q03034	503 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	PML39	Q03760	334 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	DLT1	Q04216	342 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	PEX10	Q05568	337 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	YDR278C	Q05612	105 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	ERF2	Q06551	359 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	RSC3	Q06639	885 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	HRK1	Q08732	759 aa	Known RBP	4.15	□□□□□ -1.75
VHS3	YOR054C	PHM7	Q12252	991 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	YDL206W	Q12424	762 aa		4.15	□□□□□ -1.75
VHS3	YOR054C	RPS17A	P02407	136 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	RPS17B	P14127	136 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	DBF2	P22204	572 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	SAN1	P22470	610 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	NIC96	P34077	839 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	TAF14	P35189	244 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	TEF4	P36008	412 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	YKL023W	P36103	277 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	YBR285W	P38354	144 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	UTP9	P38882	575 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	FRT2	P39734	528 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	ZRG8	P40021	1076 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	YGR210C	P42942	411 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	LIA1	P47120	325 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	COG2	P53271	262 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	MRPL50	P53724	139 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	DID2	P69771	204 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	SDH1	Q00711	640 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	MUK1	Q02866	612 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	MTG1	Q03151	367 aa	Predicted RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	PEX29	Q03370	554 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	OYE2	Q03558	400 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	RVB1	Q03940	463 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	RPN9	Q04062	393 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	YMR226C	Q05016	267 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	DBP9	Q06218	594 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	NTG2	Q08214	380 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	THP3	Q12049	470 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	HER1	Q12276	1246 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	CHO2	P05374	869 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	CDC24	P11433	854 aa	Predicted RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	HAP4	P14064	554 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	CMK2	P22517	447 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	GFD2	P25370	566 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	PTP2	P29461	750 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	IMP3	P32899	183 aa	Predicted RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	PXA2	P34230	853 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	SET3	P36124	751 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	RXT2	P38255	430 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	TDP1	P38319	544 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	RRF1	P38771	230 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	KEL1	P38853	1164 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	RCY1	P39531	840 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	PSF2	P40359	213 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	YJL070C	P40361	888 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	YIL077C	P40508	320 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	PCI8	P40512	444 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	BFA1	P47113	574 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	CGR1	P53188	120 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	YTP1	P53584	459 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	YNL193W	P53870	558 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	NMA111	P53920	997 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	RPL22B	P56628	122 aa	Known RBP	4.14	□□□□□ -1.75
VHS3	YOR054C	MRPL13	Q02204	264 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	YPL034W	Q03083	165 aa		4.14	□□□□□ -1.75
VHS3	YOR054C	YLL007C	Q07799	665 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 41.9 ms