RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHR3	YDL212W	MCM3	P24279	971 aa	Known RBP	4.79	□□□□□ -1.64
SHR3	YDL212W	COQ3	P27680	312 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	RPF2	P36160	344 aa	Known RBP	4.79	□□□□□ -1.64
SHR3	YDL212W	CAB2	P40506	365 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	AAT1	Q01802	451 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	IWR1	Q07532	353 aa	Predicted RBP	4.79	□□□□□ -1.64
SHR3	YDL212W	PFA4	Q12006	378 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	SUL2	Q12325	893 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	YPT1	P01123	206 aa	Known RBP	4.78	□□□□□ -1.64
SHR3	YDL212W	PTP2	P29461	750 aa		4.78	□□□□□ -1.64
SHR3	YDL212W	SIP1	P32578	815 aa		4.78	□□□□□ -1.64
SHR3	YDL212W	YBR138C	P38277	524 aa		4.78	□□□□□ -1.64
SHR3	YDL212W	CPR6	P53691	371 aa	Known RBP	4.78	□□□□□ -1.64
SHR3	YDL212W	MPS1	P54199	764 aa		4.78	□□□□□ -1.64
SHR3	YDL212W	COX1	P00401	534 aa		4.77	□□□□□ -1.65
SHR3	YDL212W	URK1	P27515	501 aa		4.77	□□□□□ -1.65
SHR3	YDL212W	MNT3	P40549	630 aa		4.77	□□□□□ -1.65
SHR3	YDL212W	GET3	Q12154	354 aa	Known RBP	4.77	□□□□□ -1.65
SHR3	YDL212W	ATP4	P05626	244 aa		4.76	□□□□□ -1.65
SHR3	YDL212W	ARP2	P32381	391 aa	Known RBP	4.76	□□□□□ -1.65
SHR3	YDL212W	YHL041W	P38730	149 aa		4.76	□□□□□ -1.65
SHR3	YDL212W	FLO5	P38894	1075 aa		4.76	□□□□□ -1.65
SHR3	YDL212W	JHD1	P40034	492 aa		4.76	□□□□□ -1.65
SHR3	YDL212W	CFD1	P40558	293 aa		4.76	□□□□□ -1.65
SHR3	YDL212W	CDC1	P40986	491 aa		4.76	□□□□□ -1.65
SHR3	YDL212W	YPR003C	P53394	754 aa		4.76	□□□□□ -1.65
SHR3	YDL212W	HER1	Q12276	1246 aa		4.76	□□□□□ -1.65
SHR3	YDL212W	ILV2	P07342	687 aa	Known RBP	4.75	□□□□□ -1.65
SHR3	YDL212W	ILS1	P09436	1072 aa	Known RBP	4.75	□□□□□ -1.65
SHR3	YDL212W	PTC6	P25646	442 aa		4.75	□□□□□ -1.65
SHR3	YDL212W	BUD16	P39988	312 aa		4.75	□□□□□ -1.65
SHR3	YDL212W	PCI8	P40512	444 aa		4.75	□□□□□ -1.65
SHR3	YDL212W	IMA1	P53051	589 aa		4.75	□□□□□ -1.65
SHR3	YDL212W	SCW4	P53334	386 aa	Known RBP	4.75	□□□□□ -1.65
SHR3	YDL212W	YNL058C	P53947	316 aa		4.75	□□□□□ -1.65
SHR3	YDL212W	RPL15B	P54780	204 aa	Predicted RBP	4.75	□□□□□ -1.65
SHR3	YDL212W	YPL068C	Q02749	293 aa		4.75	□□□□□ -1.65
SHR3	YDL212W	YPL108W	Q02872	168 aa	Predicted RBP	4.75	□□□□□ -1.65
SHR3	YDL212W	LEA1	Q08963	238 aa	Predicted RBP	4.75	□□□□□ -1.65
SHR3	YDL212W	BIK1	P11709	440 aa		4.74	□□□□□ -1.65
SHR3	YDL212W	SEC18	P18759	758 aa	Known RBP	4.74	□□□□□ -1.65
SHR3	YDL212W	LAC1	P28496	418 aa		4.74	□□□□□ -1.65
SHR3	YDL212W	ASK1	P35734	292 aa		4.74	□□□□□ -1.65
SHR3	YDL212W	HES1	P35843	434 aa		4.74	□□□□□ -1.65
SHR3	YDL212W	YMR124W	P39523	943 aa	Known RBP	4.74	□□□□□ -1.65
SHR3	YDL212W	STP3	Q05937	343 aa		4.74	□□□□□ -1.65
SHR3	YDL212W	YOL057W	Q08225	711 aa		4.74	□□□□□ -1.65
SHR3	YDL212W	YPR089W	O13585	888 aa		4.73	□□□□□ -1.65
SHR3	YDL212W	PET122	P10355	254 aa		4.73	□□□□□ -1.65
SHR3	YDL212W	YEF3	P16521	1044 aa	Known RBP	4.73	□□□□□ -1.65
SHR3	YDL212W	YCP4	P25349	247 aa	Known RBP	4.73	□□□□□ -1.65
SHR3	YDL212W	PUG1	P40100	303 aa		4.73	□□□□□ -1.65
SHR3	YDL212W	TAN1	P53072	289 aa	Predicted RBP	4.73	□□□□□ -1.65
SHR3	YDL212W	ATG21	Q02887	496 aa		4.73	□□□□□ -1.65
SHR3	YDL212W	GTB1	Q04924	702 aa		4.73	□□□□□ -1.65
SHR3	YDL212W	APA1	P16550	321 aa	Known RBP	4.72	□□□□□ -1.65
SHR3	YDL212W	MSH1	P25846	959 aa		4.72	□□□□□ -1.65
SHR3	YDL212W	RPT3	P33298	428 aa	Known RBP	4.72	□□□□□ -1.65
SHR3	YDL212W	RPT2	P40327	437 aa	Known RBP	4.72	□□□□□ -1.65
SHR3	YDL212W	YJL107C	P42947	387 aa		4.72	□□□□□ -1.65
SHR3	YDL212W	ORC5	P50874	479 aa		4.72	□□□□□ -1.65
SHR3	YDL212W	THI3	Q07471	609 aa		4.72	□□□□□ -1.65
SHR3	YDL212W	RRP6	Q12149	733 aa	Known RBP	4.72	□□□□□ -1.65
SHR3	YDL212W	NYV1	Q12255	253 aa		4.72	□□□□□ -1.65
SHR3	YDL212W	RVB2	Q12464	471 aa	Known RBP	4.72	□□□□□ -1.65
SHR3	YDL212W	FUN12	P39730	1002 aa	Known RBP	4.71	□□□□□ -1.66
SHR3	YDL212W	IRC8	P47046	822 aa		4.71	□□□□□ -1.66
SHR3	YDL212W	MIS1	P09440	975 aa	Known RBP	4.7	□□□□□ -1.66
SHR3	YDL212W	YML003W	P0CF16	290 aa		4.7	□□□□□ -1.66
SHR3	YDL212W	PCT1	P13259	424 aa		4.7	□□□□□ -1.66
SHR3	YDL212W	NCP1	P16603	691 aa	Known RBP	4.7	□□□□□ -1.66
SHR3	YDL212W	AIM17	P23180	465 aa	Known RBP	4.7	□□□□□ -1.66
SHR3	YDL212W	YSP3	P25036	478 aa		4.7	□□□□□ -1.66
SHR3	YDL212W	RFA2	P26754	273 aa	Known RBP	4.7	□□□□□ -1.66
SHR3	YDL212W	GEX2	P36173	615 aa		4.7	□□□□□ -1.66
SHR3	YDL212W	MSY1	P48527	492 aa		4.7	□□□□□ -1.66
SHR3	YDL212W	YRB30	P53107	440 aa	Predicted RBP	4.7	□□□□□ -1.66
SHR3	YDL212W	YDR109C	Q04585	715 aa		4.7	□□□□□ -1.66
SHR3	YDL212W	CIA1	Q05583	330 aa		4.7	□□□□□ -1.66
SHR3	YDL212W	CNA1	P23287	553 aa		4.69	□□□□□ -1.66
SHR3	YDL212W	SWC3	P31376	625 aa		4.69	□□□□□ -1.66
SHR3	YDL212W	GND1	P38720	489 aa	Known RBP	4.69	□□□□□ -1.66
SHR3	YDL212W	ARN1	P38731	627 aa		4.69	□□□□□ -1.66
SHR3	YDL212W	FSH1	P38777	243 aa	Known RBP	4.69	□□□□□ -1.66
SHR3	YDL212W	SPC97	P38863	823 aa		4.69	□□□□□ -1.66
SHR3	YDL212W	ERR3	P42222	437 aa		4.69	□□□□□ -1.66
SHR3	YDL212W	UBX6	P47049	396 aa		4.69	□□□□□ -1.66
SHR3	YDL212W	ADE16	P54113	591 aa	Known RBP	4.69	□□□□□ -1.66
SHR3	YDL212W	MTG1	Q03151	367 aa	Predicted RBP	4.69	□□□□□ -1.66
SHR3	YDL212W	RRI1	Q12468	440 aa		4.69	□□□□□ -1.66
SHR3	YDL212W	CLB4	P24871	460 aa		4.68	□□□□□ -1.66
SHR3	YDL212W	EXO84	P38261	753 aa		4.68	□□□□□ -1.66
SHR3	YDL212W	VPS27	P40343	622 aa	Known RBP	4.68	□□□□□ -1.66
SHR3	YDL212W	ZAP1	P47043	880 aa		4.68	□□□□□ -1.66
SHR3	YDL212W	LYS20	P48570	428 aa	Known RBP	4.68	□□□□□ -1.66
SHR3	YDL212W	MGM1	P32266	881 aa		4.67	□□□□□ -1.66
SHR3	YDL212W	VPS41	P38959	992 aa		4.67	□□□□□ -1.66
SHR3	YDL212W	ARC35	P53731	342 aa	Known RBP	4.67	□□□□□ -1.66
SHR3	YDL212W	EAF7	P53911	425 aa	Known RBP	4.67	□□□□□ -1.66
SHR3	YDL212W	VTC3	Q02725	835 aa		4.67	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 121.5 ms